Variant report

Variant	rs12331834
Chromosome Location	chr4:143523676-143523677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002299	0.83[AFR][1000 genomes]
rs10002937	1.00[AFR][1000 genomes]
rs10008407	0.83[AFR][1000 genomes]
rs10008556	0.83[AFR][1000 genomes]
rs10010772	0.83[AFR][1000 genomes]
rs10013934	0.94[AFR][1000 genomes]
rs10014555	0.83[AFR][1000 genomes]
rs10014747	0.83[AFR][1000 genomes]
rs10014849	0.83[AFR][1000 genomes]
rs10014859	0.83[AFR][1000 genomes]
rs10019887	0.94[AFR][1000 genomes]
rs10020192	1.00[AFR][1000 genomes]
rs10021085	0.83[AFR][1000 genomes]
rs10032060	1.00[AFR][1000 genomes]
rs12331694	0.83[AFR][1000 genomes]
rs1425529	0.83[AFR][1000 genomes]
rs17016424	0.83[AFR][1000 genomes]
rs17016428	0.83[AFR][1000 genomes]
rs17016476	0.83[AFR][1000 genomes]
rs2113995	0.83[AFR][1000 genomes]
rs2162106	0.83[AFR][1000 genomes]
rs2162107	0.83[AFR][1000 genomes]
rs28413753	0.83[AFR][1000 genomes]
rs28481559	0.83[AFR][1000 genomes]
rs28491456	0.87[AFR][1000 genomes]
rs28562975	0.83[AFR][1000 genomes]
rs28612359	0.83[AFR][1000 genomes]
rs28620580	0.83[AFR][1000 genomes]
rs28701753	0.83[AFR][1000 genomes]
rs28713525	0.83[AFR][1000 genomes]
rs28753390	1.00[AFR][1000 genomes]
rs28758948	0.83[AFR][1000 genomes]
rs3909597	0.83[AFR][1000 genomes]
rs3909598	0.83[AFR][1000 genomes]
rs4340863	0.83[AFR][1000 genomes]
rs4361463	0.83[AFR][1000 genomes]
rs4560493	0.83[AFR][1000 genomes]
rs4560494	0.83[AFR][1000 genomes]
rs4563566	0.83[AFR][1000 genomes]
rs4579200	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143516000-143523800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143517000-143530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:143518400-143524200	Weak transcription	Aorta	Aorta
5	chr4:143519600-143525000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:143520600-143523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:143520800-143524000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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