Variant report

Variant	rs12333329
Chromosome Location	chr6:56071738-56071739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10046394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475573	1.00[AMR][1000 genomes]
rs9475574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475576	0.83[AFR][1000 genomes]
rs9475579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475582	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475585	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475592	0.91[AFR][1000 genomes]
rs9475597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475605	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475619	0.91[AFR][1000 genomes]
rs9475625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475629	1.00[AFR][1000 genomes]
rs9475630	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung

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