Variant report
| Variant | rs12333899 |
|---|---|
| Chromosome Location | chr7:126403915-126403916 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10229548 | 0.86[YRI][hapmap] |
| rs10238240 | 1.00[EUR][1000 genomes] |
| rs10243157 | 1.00[EUR][1000 genomes] |
| rs10246394 | 1.00[EUR][1000 genomes] |
| rs10252394 | 1.00[EUR][1000 genomes] |
| rs10262712 | 0.95[YRI][hapmap] |
| rs10267858 | 1.00[EUR][1000 genomes] |
| rs1419509 | 1.00[EUR][1000 genomes] |
| rs2106191 | 1.00[EUR][1000 genomes] |
| rs28536013 | 1.00[EUR][1000 genomes] |
| rs59800028 | 1.00[EUR][1000 genomes] |
| rs61207606 | 1.00[EUR][1000 genomes] |
| rs61755405 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6944763 | 0.95[YRI][hapmap] |
| rs6946530 | 1.00[EUR][1000 genomes] |
| rs73449067 | 1.00[EUR][1000 genomes] |
| rs73449077 | 1.00[EUR][1000 genomes] |
| rs73449083 | 1.00[EUR][1000 genomes] |
| rs73449094 | 1.00[EUR][1000 genomes] |
| rs73449095 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
