Variant report

Variant	rs12335336
Chromosome Location	chr8:130132993-130132994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10088545	0.86[AFR][1000 genomes]
rs10091200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105749	0.86[AFR][1000 genomes]
rs10107730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478914	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28564354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130124200-130133200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
3	chr8:130128600-130135200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:130131200-130136000	Genic enhancers	Dnd41	blood
5	chr8:130131400-130133200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:130131400-130133800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:130131600-130134000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:130131800-130134600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:130131800-130134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:130131800-130135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:130132000-130133400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:130132200-130134800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:130132400-130133800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:130132600-130133400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:130132800-130133600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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