Variant report

Variant	rs12339824
Chromosome Location	chr9:470816-470817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr9:470487-470860	GM12878	blood:	n/a	chr9:470550-470561 chr9:470707-470718
2	ZNF263	chr9:469910-470972	HEK293-T-REx	kidney:	n/a	chr9:470570-470579
3	MAX	chr9:469746-470976	A549	lung:	n/a	n/a
4	POLR2A	chr9:468277-471159	GM12878	blood:	n/a	n/a
5	MAX	chr9:469996-470849	K562	blood:	n/a	n/a
6	NFIC	chr9:470218-471071	ECC-1	luminal epithelium:	n/a	chr9:470724-470741
7	POLR2A	chr9:469575-470846	ECC-1	luminal epithelium:	n/a	n/a
8	E2F6	chr9:469815-470907	A549	lung:	n/a	chr9:470121-470131
9	POLR2A	chr9:469757-471156	HepG2	liver:	n/a	n/a
10	MAX	chr9:469644-471112	A549	lung:	n/a	n/a
11	TAF1	chr9:469853-470870	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr9:469654-471048	SK-N-MC	brain:	n/a	n/a
13	POLR2A	chr9:469731-470892	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr9:469600-470956	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:469906-470961	Hela-S3	cervix:	n/a	n/a
16	BCL3	chr9:470157-470838	A549	lung:	n/a	n/a
17	POLR2A	chr9:469160-471529	Raji	blood:	n/a	n/a
18	PML	chr9:469601-470888	GM12878	blood:	n/a	n/a
19	TCF12	chr9:469609-470842	A549	lung:	n/a	n/a
20	STAT5A	chr9:469509-471039	GM12878	blood:	n/a	chr9:469685-469708 chr9:470148-470160
21	POLR2A	chr9:469620-470821	MCF-7	breast:	n/a	n/a
22	MAX	chr9:469919-470972	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr9:468971-470881	GM18951	blood:	n/a	n/a
24	NFIC	chr9:470320-471123	ECC-1	luminal epithelium:	n/a	chr9:470724-470741
25	MYBL2	chr9:470180-470828	HepG2	liver:	n/a	n/a
26	RUNX3	chr9:469847-470842	GM12878	blood:	n/a	n/a
27	POLR2A	chr9:470813-470954	GM12878	blood:	n/a	n/a
28	MAX	chr9:469866-471008	ECC-1	luminal epithelium:	n/a	n/a
29	POLR2A	chr9:469660-470830	GM18526	blood:	n/a	n/a
30	MAX	chr9:469818-471243	NB4	blood:	n/a	n/a
31	CUX1	chr9:470814-470872	GM12878	blood:	n/a	n/a
32	E2F6	chr9:470152-470827	K562	blood:	n/a	n/a
33	TBP	chr9:469744-470835	GM12878	blood:	n/a	n/a
34	POLR2A	chr9:468474-470861	GM12891	blood:	n/a	n/a
35	MAX	chr9:469851-470967	ECC-1	luminal epithelium:	n/a	n/a
36	MAX	chr9:469555-470934	MCF-7	breast:	n/a	n/a
37	POLR2A	chr9:469580-470836	HL-60	blood:	n/a	n/a
38	POLR2A	chr9:469791-470892	K562	blood:	n/a	n/a
39	E2F6	chr9:469871-470855	H1-hESC	embryonic stem cell:	n/a	chr9:470121-470131
40	HCFC1	chr9:469506-470937	Hela-S3	cervix:	n/a	n/a
41	MXI1	chr9:469766-470885	GM12878	blood:	n/a	n/a
42	MAX	chr9:470151-470822	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:469030..473266-chr9:476113..479118,4	MCF-7	breast:
2	chr9:469326..471004-chr9:547085..549851,2	MCF-7	breast:
3	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:
4	chr10:74033442..74034170-chr9:469881..470831,2	NB4	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-2	chr9:470765-470961	ENSG00000227155.3
2	lnc-C9orf66-2	chr9:470765-470816	ENSG00000227155.3
3	lnc-C9orf66-2	chr9:470765-470934	ENSG00000227155.3

No data

Variant related genes	Relation type
KANK1	TF binding region
ENSG00000227155	TF binding region
ENSG00000107104	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000226403	Chromatin interaction
ENSG00000235330	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1007886	1.00[EUR][1000 genomes]
rs10118662	1.00[EUR][1000 genomes]
rs10119358	1.00[EUR][1000 genomes]
rs10119849	1.00[EUR][1000 genomes]
rs10120652	1.00[EUR][1000 genomes]
rs10120656	1.00[EUR][1000 genomes]
rs10120682	1.00[EUR][1000 genomes]
rs10124264	1.00[EUR][1000 genomes]
rs10124592	1.00[EUR][1000 genomes]
rs10125427	1.00[EUR][1000 genomes]
rs10491601	1.00[EUR][1000 genomes]
rs10974353	1.00[EUR][1000 genomes]
rs10974856	1.00[EUR][1000 genomes]
rs12336145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346203	1.00[EUR][1000 genomes]
rs12351491	1.00[EUR][1000 genomes]
rs16919428	1.00[EUR][1000 genomes]
rs16919558	1.00[EUR][1000 genomes]
rs16919987	1.00[EUR][1000 genomes]
rs16920060	1.00[EUR][1000 genomes]
rs16920514	1.00[EUR][1000 genomes]
rs16935976	1.00[EUR][1000 genomes]
rs2068736	1.00[EUR][1000 genomes]
rs2131778	1.00[EUR][1000 genomes]
rs57352040	1.00[EUR][1000 genomes]
rs58702657	1.00[EUR][1000 genomes]
rs59057540	1.00[EUR][1000 genomes]
rs59363005	1.00[EUR][1000 genomes]
rs60196038	1.00[EUR][1000 genomes]
rs60638356	1.00[EUR][1000 genomes]
rs61591244	1.00[EUR][1000 genomes]
rs6476809	1.00[EUR][1000 genomes]
rs7026359	1.00[EUR][1000 genomes]
rs7026360	1.00[EUR][1000 genomes]
rs7026381	1.00[EUR][1000 genomes]
rs7030137	1.00[EUR][1000 genomes]
rs7038982	1.00[EUR][1000 genomes]
rs72705656	1.00[EUR][1000 genomes]
rs73371010	1.00[EUR][1000 genomes]
rs73371044	1.00[EUR][1000 genomes]
rs73371075	1.00[EUR][1000 genomes]
rs73373075	1.00[EUR][1000 genomes]
rs73373081	1.00[EUR][1000 genomes]
rs73376916	1.00[EUR][1000 genomes]
rs73376918	1.00[EUR][1000 genomes]
rs73376921	1.00[EUR][1000 genomes]
rs73639346	1.00[EUR][1000 genomes]
rs7858168	1.00[EUR][1000 genomes]
rs7872247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1034457	chr9:209254-482833	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1015681	chr9:209254-503325	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv539826	chr9:209254-503325	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv1031505	chr9:214166-472285	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv539842	chr9:214166-472285	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
25	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
26	nsv1034686	chr9:214366-486131	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
27	nsv539858	chr9:214366-486131	Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
31	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
33	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
36	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	nsv918092	chr9:229197-502446	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
38	nsv1027206	chr9:236075-499586	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
39	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
40	nsv471267	chr9:237988-500979	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
41	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
42	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
43	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
44	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
45	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv531561	chr9:313298-472145	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:468600-471000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:468800-471000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr9:469000-471000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
4	chr9:469200-471000	Flanking Active TSS	Fetal Muscle Trunk	muscle
5	chr9:469200-471400	Flanking Active TSS	Dnd41	blood
6	chr9:469400-471000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:469400-471200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:469600-471000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr9:469800-471000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:469800-471000	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr9:469800-471200	Active TSS	Rectal Smooth Muscle	rectum
12	chr9:470000-471400	Active TSS	Fetal Kidney	kidney
13	chr9:470400-471000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:470400-471000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:470400-471000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:470400-471000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr9:470400-471000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr9:470400-471000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr9:470400-471000	Flanking Active TSS	Primary B cells from peripheral blood	blood
20	chr9:470400-471000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr9:470400-471000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr9:470400-471000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:470400-471000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:470400-471000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:470400-471000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr9:470400-471000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr9:470400-471000	Flanking Active TSS	Fetal Lung	lung
28	chr9:470400-471000	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr9:470400-471000	Flanking Active TSS	Placenta	Placenta
30	chr9:470400-471000	Flanking Active TSS	Fetal Stomach	stomach
31	chr9:470400-471000	Flanking Active TSS	Fetal Thymus	thymus
32	chr9:470400-471000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr9:470400-471000	Flanking Active TSS	Hela-S3	cervix
34	chr9:470400-471000	Flanking Active TSS	HepG2	liver
35	chr9:470400-471000	Flanking Active TSS	HUVEC	blood vessel
36	chr9:470400-471000	Flanking Active TSS	NHEK	skin
37	chr9:470400-471200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:470400-471200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:470400-471200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:470400-471200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr9:470400-471200	Flanking Active TSS	Fetal Heart	heart
42	chr9:470400-471200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr9:470400-471200	Flanking Active TSS	K562	blood
44	chr9:470400-471400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr9:470400-471400	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr9:470400-471400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr9:470400-471400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr9:470400-471400	Flanking Active TSS	GM12878-XiMat	blood
49	chr9:470600-471000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
50	chr9:470600-471000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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