Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10117049	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963227	0.82[AFR][1000 genomes]
rs12554313	0.82[AFR][1000 genomes]
rs1536073	0.95[CHB][hapmap]
rs2025557	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025558	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025559	0.85[CHB][hapmap]
rs2182084	0.82[MEX][hapmap];0.82[TSI][hapmap]
rs2182090	0.82[TSI][hapmap]
rs2209437	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap]
rs2209438	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs2209439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2224957	0.91[LWK][hapmap];0.83[AFR][1000 genomes]
rs3780234	0.82[MEX][hapmap];0.84[TSI][hapmap]
rs3808689	0.96[CEU][hapmap]
rs3808690	0.96[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3808700	0.86[MEX][hapmap];0.82[TSI][hapmap]
rs7021836	0.81[MEX][hapmap]
rs717373	0.95[CHB][hapmap];0.80[CHD][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7850335	0.80[CHB][hapmap]
rs7874110	0.80[AFR][1000 genomes]
rs7875763	0.85[CHB][hapmap]
rs998599	0.86[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12341417	IFNA8	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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