Variant report

Variant	rs1234632
Chromosome Location	chr9:72084290-72084291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1029066	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10780336	0.82[JPT][hapmap]
rs10867453	0.81[JPT][hapmap]
rs10867655	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10867656	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11138435	0.81[JPT][hapmap]
rs1217338	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1217339	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330329	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1331973	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1331974	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1331976	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1331977	0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1761285	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806760	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1888834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2150878	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2777862	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777863	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2777865	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2781533	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2781535	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2991694	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2991695	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3737172	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3737175	0.82[ASN][1000 genomes]
rs4323531	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4492445	0.82[JPT][hapmap]
rs4744569	0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6559613	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7019125	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7021184	0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7024302	0.81[JPT][hapmap]
rs7035141	0.81[JPT][hapmap]
rs7049022	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72717108	0.85[ASN][1000 genomes]
rs7850318	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7850597	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7853648	0.81[ASW][hapmap]
rs7858171	0.81[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap]
rs7860931	0.81[ASW][hapmap]
rs7866199	0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7872660	0.91[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs879767	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs914551	0.93[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9410852	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9776833	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037109	chr9:72040184-72120270	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430067	chr9:72080989-72116806	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72044200-72084400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:72045000-72084400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:72046400-72085600	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72070800-72085600	Weak transcription	Gastric	stomach
5	chr9:72077200-72086800	Weak transcription	Fetal Brain Male	brain
6	chr9:72079000-72086400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:72079000-72091600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:72079200-72086200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:72079800-72085000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:72080400-72089400	Weak transcription	Fetal Thymus	thymus
11	chr9:72081200-72087000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:72081400-72085600	Weak transcription	Left Ventricle	heart
13	chr9:72081600-72084600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:72081600-72090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:72081800-72085800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:72081800-72086200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:72082000-72091000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:72082200-72090600	Weak transcription	Fetal Lung	lung
19	chr9:72082200-72091000	Weak transcription	Fetal Stomach	stomach
20	chr9:72082400-72085600	Weak transcription	Brain Anterior Caudate	brain
21	chr9:72082400-72090200	Weak transcription	Spleen	Spleen
22	chr9:72082400-72091200	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:72082600-72086600	Weak transcription	Fetal Brain Female	brain
24	chr9:72082800-72084400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:72082800-72085400	Weak transcription	Aorta	Aorta
26	chr9:72082800-72085600	Weak transcription	Ovary	ovary
27	chr9:72082800-72085800	Weak transcription	Brain Substantia Nigra	brain
28	chr9:72082800-72088000	Enhancers	Liver	Liver
29	chr9:72082800-72091000	Weak transcription	Esophagus	oesophagus
30	chr9:72082800-72091400	Weak transcription	Brain Germinal Matrix	brain
31	chr9:72083000-72085600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:72083000-72085600	Weak transcription	Pancreas	Pancrea
33	chr9:72083000-72087800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:72083000-72088200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:72083000-72089800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:72083000-72091000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:72083200-72086200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:72083200-72087200	Weak transcription	Brain Angular Gyrus	brain
39	chr9:72084000-72084600	Enhancers	HUVEC	blood vessel
40	chr9:72084200-72084400	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr9:72084200-72085600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:72084200-72086400	Enhancers	Rectal Mucosa Donor 29	rectum

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