Variant report

Variant	rs12353500
Chromosome Location	chr9:71067802-71067803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10116868	0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10511958	0.81[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.91[ASN][1000 genomes]
rs10735596	0.91[JPT][hapmap]
rs10780962	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10780963	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10780967	0.88[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10781002	0.82[GIH][hapmap]
rs10868795	0.91[JPT][hapmap]
rs10868796	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10868803	0.90[JPT][hapmap]
rs10868804	0.91[JPT][hapmap]
rs10868817	0.98[EUR][1000 genomes]
rs10868826	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10868851	0.82[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10868852	0.82[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10868876	0.85[ASN][1000 genomes]
rs10868877	0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10868879	0.81[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11142075	0.91[JPT][hapmap]
rs11142199	0.91[JPT][hapmap]
rs11142305	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11142391	0.91[GIH][hapmap]
rs11142449	0.91[GIH][hapmap]
rs11142461	0.91[GIH][hapmap]
rs11142468	0.98[ASN][1000 genomes]
rs11142500	0.86[GIH][hapmap]
rs11142543	0.90[ASN][1000 genomes]
rs11142549	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11142650	0.81[JPT][hapmap]
rs12000789	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12238439	1.00[GIH][hapmap]
rs13439981	0.91[GIH][hapmap]
rs1353009	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs1492823	0.91[JPT][hapmap]
rs1492824	0.91[JPT][hapmap]
rs17056009	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1887889	0.91[JPT][hapmap]
rs2026033	0.91[JPT][hapmap]
rs2026034	0.91[JPT][hapmap]
rs265083	0.91[GIH][hapmap]
rs265087	0.86[GIH][hapmap]
rs35011246	0.86[ASN][1000 genomes]
rs4237244	0.81[ASN][1000 genomes]
rs4237245	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4744594	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4745041	0.88[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes]
rs624149	0.81[JPT][hapmap]
rs6560144	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7019238	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7020465	0.91[JPT][hapmap]
rs7022220	0.81[JPT][hapmap]
rs7022394	0.82[ASN][1000 genomes]
rs7025140	0.91[JPT][hapmap]
rs7026163	0.88[ASN][1000 genomes]
rs7030076	0.83[ASN][1000 genomes]
rs7031619	0.86[ASN][1000 genomes]
rs7035038	0.88[ASN][1000 genomes]
rs7039149	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7039686	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7042123	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7855134	1.00[GIH][hapmap];0.90[TSI][hapmap]
rs7860270	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7875408	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71058200-71068000	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:71062200-71069400	Weak transcription	NHLF	lung
4	chr9:71062200-71075800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:71062400-71072200	Weak transcription	Fetal Heart	heart
6	chr9:71063200-71070800	Weak transcription	Fetal Lung	lung
7	chr9:71065000-71069800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:71066600-71068000	Genic enhancers	Stomach Smooth Muscle	stomach
10	chr9:71067400-71069400	Weak transcription	Aorta	Aorta
11	chr9:71067400-71069400	Weak transcription	Spleen	Spleen
12	chr9:71067600-71071400	Enhancers	Colon Smooth Muscle	Colon
13	chr9:71067800-71068800	Weak transcription	Fetal Stomach	stomach
14	chr9:71067800-71068800	Weak transcription	Right Ventricle	heart
15	chr9:71067800-71069200	Weak transcription	Left Ventricle	heart
16	chr9:71067800-71070000	Weak transcription	Right Atrium	heart
17	chr9:71067800-71077000	Weak transcription	Lung	lung

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