Variant report

Variant	rs12357206
Chromosome Location	chr10:61790383-61790384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61664172..61667857-chr10:61789387..61792774,4	MCF-7	breast:
2	chr10:61789509..61792729-chr10:61793326..61795751,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1049862	0.84[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821657	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821659	0.89[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap]
rs10994158	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs11597421	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11813307	0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.81[MEX][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7906905	0.89[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61783600-61801200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:61786000-61795600	Weak transcription	Placenta	Placenta
3	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
4	chr10:61787800-61791000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:61788800-61792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:61789000-61798000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:61789200-61790600	Enhancers	Fetal Intestine Large	intestine
10	chr10:61789200-61793600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:61789200-61802800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:61789400-61793400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:61789400-61807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:61789600-61790400	Enhancers	Stomach Mucosa	stomach
15	chr10:61789600-61790600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:61789600-61791400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:61789600-61791400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:61789600-61791800	Enhancers	Fetal Intestine Small	intestine
19	chr10:61789600-61792000	Enhancers	Fetal Lung	lung
20	chr10:61789600-61802800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
22	chr10:61790000-61803400	Weak transcription	Fetal Brain Male	brain
23	chr10:61790200-61790600	Enhancers	Ovary	ovary
24	chr10:61790200-61790600	Enhancers	Pancreas	Pancrea
25	chr10:61790200-61791800	Enhancers	Fetal Stomach	stomach
26	chr10:61790200-61791800	Enhancers	K562	blood
27	chr10:61790200-61793000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood

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