Variant report

Variant	rs12358745
Chromosome Location	chr10:52554416-52554417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52553280..52555784-chr10:52575135..52577429,2	K562	blood:
2	chr10:52553366..52555784-chr10:52575135..52576660,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508933	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs10761546	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761548	0.88[ASN][1000 genomes]
rs10821678	0.83[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs10821698	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10821825	0.88[ASN][1000 genomes]
rs10821846	0.88[ASN][1000 genomes]
rs10821854	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10821859	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10994196	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs10994489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994492	0.90[ASN][1000 genomes]
rs10994504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994563	0.84[CEU][hapmap]
rs11598887	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs16751	0.88[ASN][1000 genomes]
rs4245009	0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4268458	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4347324	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs4460764	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[MEX][hapmap]
rs4531415	0.88[ASN][1000 genomes]
rs4550168	0.90[ASN][1000 genomes]
rs4617537	0.90[ASN][1000 genomes]
rs4935006	0.88[ASN][1000 genomes]
rs4935007	0.90[ASN][1000 genomes]
rs4935178	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4935191	0.90[ASN][1000 genomes]
rs4935192	0.90[ASN][1000 genomes]
rs6479701	0.95[JPT][hapmap]
rs7068127	0.91[JPT][hapmap]
rs7089428	0.88[ASN][1000 genomes]
rs7895606	0.90[ASN][1000 genomes]
rs7913937	0.90[ASN][1000 genomes]
rs7917358	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12358745	CTSLP4	cis	Thyroid	GTEx
rs12358745	PSTPIP2	trans	lymphoblastoid	seeQTL
rs12358745	FRMPD2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52549600-52562800	Weak transcription	Liver	Liver
2	chr10:52553800-52554600	Weak transcription	Pancreas	Pancrea
3	chr10:52554200-52554800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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