Variant report

Variant	rs12360818
Chromosome Location	chr11:9914904-9914905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10770072	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs10770074	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11042541	0.81[CHB][hapmap]
rs11042549	0.91[JPT][hapmap]
rs12099354	0.87[EUR][1000 genomes]
rs12365540	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12365901	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12796169	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1546541	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1546542	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35396321	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4334006	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4445629	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4498988	0.90[CEU][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4616018	0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs4910076	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4910082	0.92[JPT][hapmap]
rs4910083	0.91[JPT][hapmap]
rs6483809	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6483811	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67701335	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7102482	0.91[JPT][hapmap]
rs7105337	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7107328	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7125054	0.92[JPT][hapmap]
rs7126063	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130681	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7130923	0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs7131516	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7350496	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925651	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7929338	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7930281	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7948688	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950655	0.80[ASN][1000 genomes]
rs9919605	0.90[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9919608	0.88[ASN][1000 genomes]
rs9919609	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9919617	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9919633	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
3	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9890600-9915200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:9891400-9916800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:9891800-9916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:9894200-9915200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:9894400-9916600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
11	chr11:9897000-9915000	Weak transcription	HSMMtube	muscle
12	chr11:9898200-9917000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:9898800-9915200	Weak transcription	Fetal Intestine Small	intestine
14	chr11:9899400-9915000	Weak transcription	Liver	Liver
15	chr11:9900600-9915000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:9901200-9915000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:9901200-9916600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:9902200-9917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:9903400-9915000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:9903600-9915200	Weak transcription	Ovary	ovary
21	chr11:9903600-9916600	Weak transcription	Fetal Lung	lung
22	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:9906000-9915000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:9906400-9915000	Weak transcription	Osteobl	bone
25	chr11:9906800-9920400	Weak transcription	HUVEC	blood vessel
26	chr11:9908400-9915000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:9909200-9915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:9909400-9915000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:9909400-9916800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:9909800-9916600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
32	chr11:9910200-9921000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:9910800-9915000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:9910800-9915000	Weak transcription	HSMM	muscle
35	chr11:9911600-9919200	Weak transcription	Fetal Brain Female	brain
36	chr11:9911800-9915000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:9911800-9921200	Weak transcription	HMEC	breast
38	chr11:9913200-9916400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:9913400-9915000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:9913400-9915000	Weak transcription	Adipose Nuclei	Adipose
41	chr11:9913400-9915200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:9913400-9916400	Weak transcription	Lung	lung
43	chr11:9913400-9916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:9913400-9916800	Weak transcription	HepG2	liver
45	chr11:9913400-9919800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:9913400-9921000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:9913600-9915000	Weak transcription	NHLF	lung
48	chr11:9913600-9921200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
50	chr11:9913800-9915600	Strong transcription	Fetal Stomach	stomach

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