Variant report

Variant	rs12364454
Chromosome Location	chr11:76336729-76336730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11236787	0.83[ASN][1000 genomes]
rs11827375	1.00[ASN][1000 genomes]
rs12363012	1.00[ASN][1000 genomes]
rs58107908	1.00[ASN][1000 genomes]
rs72934333	1.00[ASN][1000 genomes]
rs72934343	1.00[ASN][1000 genomes]
rs7951308	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76328600-76340400	Weak transcription	Right Atrium	heart
2	chr11:76332000-76340400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:76333400-76340200	Weak transcription	Ovary	ovary
4	chr11:76334000-76341000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76334200-76340400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:76335000-76337600	Weak transcription	NH-A	brain
7	chr11:76335000-76337600	Weak transcription	Osteobl	bone
8	chr11:76335200-76340000	Weak transcription	NHLF	lung
9	chr11:76335400-76340000	Weak transcription	HUVEC	blood vessel
10	chr11:76335600-76340000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:76336000-76337400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr11:76336000-76338000	ZNF genes & repeats	GM12878-XiMat	blood
13	chr11:76336200-76336800	Weak transcription	Right Ventricle	heart
14	chr11:76336600-76337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:76336600-76337800	ZNF genes & repeats	Fetal Stomach	stomach
16	chr11:76336600-76338800	Weak transcription	Fetal Heart	heart
17	chr11:76336600-76340600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:76336600-76341200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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