Variant report

Variant	rs12364529
Chromosome Location	chr11:16923799-16923800
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10832696	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10832697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024053	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11024065	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs11024075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11601588	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12362925	0.84[CEU][hapmap]
rs12708338	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2058160	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs35865759	0.87[EUR][1000 genomes]
rs59258722	0.95[EUR][1000 genomes]
rs7123174	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs72864081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72864087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865706	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931313	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
2	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
4	chr11:16918200-16924800	Weak transcription	Colonic Mucosa	Colon
5	chr11:16919400-16927000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:16919600-16924200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:16919600-16925400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
9	chr11:16920000-16924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:16920000-16924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:16920200-16924200	Weak transcription	Adipose Nuclei	Adipose
12	chr11:16920400-16924600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:16920400-16927000	Weak transcription	Right Atrium	heart
14	chr11:16921600-16927000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:16921600-16927200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:16921800-16924800	Weak transcription	Left Ventricle	heart
17	chr11:16921800-16926600	Weak transcription	Gastric	stomach
18	chr11:16921800-16926600	Weak transcription	Pancreas	Pancrea
19	chr11:16921800-16927000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:16922000-16934000	Weak transcription	HepG2	liver
21	chr11:16922200-16927200	Weak transcription	Fetal Lung	lung
22	chr11:16922400-16923800	Weak transcription	Fetal Heart	heart
23	chr11:16922800-16925600	Enhancers	HMEC	breast
24	chr11:16923000-16924800	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:16923000-16925800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:16923000-16926000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:16923200-16924000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:16923200-16924400	Enhancers	Small Intestine	intestine
29	chr11:16923200-16925800	Enhancers	Primary B cells from peripheral blood	blood
30	chr11:16923400-16924000	Enhancers	Osteobl	bone
31	chr11:16923400-16925000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:16923400-16925000	Enhancers	NHEK	skin
33	chr11:16923400-16925600	Flanking Active TSS	GM12878-XiMat	blood
34	chr11:16923400-16926000	Enhancers	Stomach Mucosa	stomach
35	chr11:16923400-16927400	Enhancers	Fetal Intestine Large	intestine
36	chr11:16923600-16924200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:16923600-16924200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:16923600-16924400	Enhancers	HUVEC	blood vessel
39	chr11:16923600-16924800	Enhancers	A549	lung
40	chr11:16923600-16925400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr11:16923600-16925600	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr11:16923600-16925800	Enhancers	Fetal Intestine Small	intestine

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