Variant report

Variant	rs12364838
Chromosome Location	chr11:55395922-55395923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11230461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12361051	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12790125	0.81[JPT][hapmap]
rs12790982	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12800642	0.81[JPT][hapmap]
rs12809058	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1551976	0.81[JPT][hapmap]
rs1812809	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34100491	0.81[JPT][hapmap]
rs384577	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1090 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
6	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
9	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
10	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases
11	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
12	nsv518225	chr11:55171677-55408700	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
13	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
14	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv832154	chr11:55222427-55408933	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	10 gene(s)	inside rSNPs	diseases
16	nsv832155	chr11:55277241-55432666	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
17	nsv916314	chr11:55289861-55495986	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv554801	chr11:55314151-55624360	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
19	nsv428256	chr11:55317076-55621884	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv975112	chr11:55321812-55426168	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
21	nsv1046316	chr11:55322211-55435115	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
22	nsv1039064	chr11:55322211-55453564	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
23	nsv522846	chr11:55322539-55396041	ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
24	esv2756721	chr11:55335878-55430530	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
25	nsv916049	chr11:55337700-55450895	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
26	esv2757445	chr11:55339702-55638112	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv467887	chr11:55339829-55447427	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
28	nsv554802	chr11:55339829-55447427	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
29	nsv554803	chr11:55340379-55408700	Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
30	nsv467888	chr11:55340379-55447427	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
31	nsv554804	chr11:55340379-55447427	Bivalent Enhancer ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
32	nsv554805	chr11:55340379-55452923	Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv517440	chr11:55340379-55604412	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	esv3444120	chr11:55340425-55406544	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
35	nsv1054704	chr11:55341679-55435115	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
36	nsv1044343	chr11:55343913-55435115	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
37	nsv1038504	chr11:55351524-55396957	ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
38	nsv1051534	chr11:55351524-55403772	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
39	nsv1037894	chr11:55351524-55408158	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
40	nsv1053726	chr11:55351524-55429961	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
41	nsv1044485	chr11:55351524-55435115	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
42	nsv1048215	chr11:55351524-55447453	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
43	nsv1035185	chr11:55351524-55453564	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv1043531	chr11:55353111-55409350	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
45	nsv1052210	chr11:55353111-55435115	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
46	nsv1036845	chr11:55353111-55445933	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island	6 gene(s)	inside rSNPs	diseases
47	nsv1039881	chr11:55353111-55453564	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
48	nsv1045993	chr11:55355067-55403772	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
49	nsv1054387	chr11:55355067-55409350	ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
50	nsv1040728	chr11:55355067-55442306	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55395800-55397000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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