Variant report

Variant	rs12371905
Chromosome Location	chr12:116799946-116799947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:116795827..116800333-chr12:116800677..116806622,10	K562	blood:
2	chr12:116795827..116800092-chr12:116804104..116806622,3	K562	blood:
3	chr12:116713109..116715590-chr12:116798796..116801323,2	K562	blood:
4	chr12:116796080..116800323-chr12:116810263..116814376,4	K562	blood:

Variant related genes	Relation type
ENSG00000258346	Chromatin interaction
ENSG00000123066	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10850618	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10850619	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11068003	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11068006	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11068007	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12228903	0.83[ASN][1000 genomes]
rs12230486	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57615867	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116795200-116800000	Enhancers	Fetal Muscle Trunk	muscle
2	chr12:116795400-116800000	Enhancers	Fetal Muscle Leg	muscle
3	chr12:116796600-116800000	Enhancers	Primary hematopoietic stem cells	blood
4	chr12:116796800-116803800	Weak transcription	Colonic Mucosa	Colon
5	chr12:116797000-116800000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr12:116797400-116803800	Weak transcription	Pancreas	Pancrea
7	chr12:116797600-116803000	Weak transcription	Small Intestine	intestine
8	chr12:116797600-116807800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:116797800-116800000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:116797800-116802200	Weak transcription	A549	lung
11	chr12:116797800-116803000	Weak transcription	HUVEC	blood vessel
12	chr12:116797800-116806200	Weak transcription	Liver	Liver
13	chr12:116798000-116802200	Weak transcription	Placenta	Placenta
14	chr12:116798000-116807800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:116798600-116803400	Weak transcription	Fetal Intestine Large	intestine
16	chr12:116799000-116803800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr12:116799200-116801400	Enhancers	Fetal Thymus	thymus
18	chr12:116799200-116803800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:116799400-116814800	Weak transcription	Spleen	Spleen
20	chr12:116799600-116800800	Enhancers	Thymus	Thymus
21	chr12:116799600-116803000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr12:116799600-116804000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:116799600-116804000	Weak transcription	Lung	lung
24	chr12:116799600-116804200	Weak transcription	Psoas Muscle	Psoas
25	chr12:116799600-116806000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr12:116799800-116800800	Enhancers	Dnd41	blood
27	chr12:116799800-116802400	Weak transcription	GM12878-XiMat	blood
28	chr12:116799800-116802400	Weak transcription	K562	blood
29	chr12:116799800-116804000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:116799800-116806200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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