Variant report

Variant	rs12372566
Chromosome Location	chr12:86843906-86843907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10444512	1.00[ASN][1000 genomes]
rs10745415	1.00[CHB][hapmap]
rs10745421	1.00[CHB][hapmap]
rs10858411	1.00[CHB][hapmap]
rs10858420	1.00[CHB][hapmap]
rs10858424	1.00[CHB][hapmap]
rs10858429	1.00[CHB][hapmap]
rs1493414	1.00[CHB][hapmap]
rs1922745	1.00[CHB][hapmap]
rs2178748	1.00[CHB][hapmap]
rs2406142	1.00[CHB][hapmap]
rs2406156	1.00[CHB][hapmap]
rs2406159	1.00[CHB][hapmap]
rs2452808	1.00[CHB][hapmap]
rs2897269	1.00[CHB][hapmap]
rs2897273	1.00[CHB][hapmap]
rs4300451	1.00[CHB][hapmap]
rs4351884	1.00[CHB][hapmap]
rs4444151	1.00[CHB][hapmap]
rs4612887	1.00[CHB][hapmap]
rs6538027	1.00[CHB][hapmap]
rs6538040	1.00[CHB][hapmap]
rs7134944	1.00[CHB][hapmap]
rs7302391	1.00[CHB][hapmap]
rs7309839	1.00[CHB][hapmap]
rs7312245	1.00[CHB][hapmap]
rs7954833	1.00[CHB][hapmap]
rs7954883	1.00[CHB][hapmap]
rs7967529	1.00[CHB][hapmap]
rs7975314	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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