Variant report

Variant	rs12375090
Chromosome Location	chr7:126742112-126742113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10954144	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11563357	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563708	0.91[YRI][hapmap]
rs11563717	0.91[YRI][hapmap]
rs11563719	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11563728	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760208	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap]
rs1361954	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17864137	0.91[YRI][hapmap]
rs17867755	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2010184	1.00[CEU][hapmap]
rs2237780	0.94[GIH][hapmap];0.94[TSI][hapmap]
rs2237784	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs2237786	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237789	1.00[CEU][hapmap]
rs2237790	1.00[ASW][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap]
rs2237791	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap]
rs2283093	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2283095	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2299530	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2299535	1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2299537	1.00[ASW][hapmap];0.97[GIH][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap]
rs2299538	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs2299539	0.91[YRI][hapmap]
rs2299541	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs3808124	0.82[JPT][hapmap]
rs3824009	0.90[GIH][hapmap];0.87[TSI][hapmap]
rs6949620	0.91[YRI][hapmap]
rs6977479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979572	1.00[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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