Variant report

Variant	rs12401372
Chromosome Location	chr1:92853778-92853779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10874637	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875349	0.90[ASN][1000 genomes]
rs11164226	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164288	0.90[ASN][1000 genomes]
rs11164312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164546	0.90[ASN][1000 genomes]
rs11577572	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11577839	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578012	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578400	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580693	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11585255	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586355	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11586989	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11588044	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588153	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11589858	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803457	0.90[ASN][1000 genomes]
rs12024731	0.90[ASN][1000 genomes]
rs12086394	0.90[ASN][1000 genomes]
rs12094293	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404806	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12406749	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407622	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411162	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12724638	0.89[ASN][1000 genomes]
rs12727665	1.00[ASN][1000 genomes]
rs12731923	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735898	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740246	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12749317	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12753920	0.89[ASN][1000 genomes]
rs12755781	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12757533	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759512	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384612	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384613	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1487536	0.90[ASN][1000 genomes]
rs1542685	0.90[ASN][1000 genomes]
rs17519385	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519972	0.89[ASN][1000 genomes]
rs17578686	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1809606	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004814	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069051	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391158	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391162	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103178	0.90[ASN][1000 genomes]
rs3131814	0.90[ASN][1000 genomes]
rs34090353	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35015161	0.89[ASN][1000 genomes]
rs35580949	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929737	0.90[ASN][1000 genomes]
rs4393167	0.90[ASN][1000 genomes]
rs4414050	0.90[ASN][1000 genomes]
rs4658294	0.89[ASN][1000 genomes]
rs4658297	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658298	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658299	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658300	0.90[ASN][1000 genomes]
rs4949888	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970699	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970713	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58394161	0.83[ASN][1000 genomes]
rs6603962	0.90[ASN][1000 genomes]
rs6603971	0.90[ASN][1000 genomes]
rs6603973	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6603974	0.83[ASN][1000 genomes]
rs6604088	0.90[ASN][1000 genomes]
rs6604090	0.90[ASN][1000 genomes]
rs6661384	0.90[ASN][1000 genomes]
rs6662379	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662920	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6663118	0.81[ASN][1000 genomes]
rs6663278	0.90[ASN][1000 genomes]
rs6663905	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668803	0.90[ASN][1000 genomes]
rs66758257	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6702267	0.90[ASN][1000 genomes]
rs72720457	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733012	0.90[ASN][1000 genomes]
rs745793	0.90[ASN][1000 genomes]
rs7511656	0.89[ASN][1000 genomes]
rs7511669	0.89[ASN][1000 genomes]
rs7517541	0.90[ASN][1000 genomes]
rs7518974	0.90[ASN][1000 genomes]
rs7520275	0.90[ASN][1000 genomes]
rs7522081	0.89[ASN][1000 genomes]
rs7524120	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539757	0.90[ASN][1000 genomes]
rs7543947	0.90[ASN][1000 genomes]
rs7550680	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9439911	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943178	0.90[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92833400-92855000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:92833400-92856000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:92834400-92855200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:92835400-92855200	Weak transcription	Hela-S3	cervix
5	chr1:92844200-92855600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:92847000-92853800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:92847200-92854000	Weak transcription	Brain Angular Gyrus	brain
8	chr1:92849600-92854800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:92849600-92854800	ZNF genes & repeats	Aorta	Aorta
10	chr1:92849600-92855200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:92849800-92854000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:92849800-92855200	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr1:92850000-92855200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr1:92850200-92855000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:92850200-92855000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr1:92850200-92855200	ZNF genes & repeats	Liver	Liver
17	chr1:92850200-92855200	ZNF genes & repeats	Fetal Brain Female	brain
18	chr1:92850200-92855400	ZNF genes & repeats	Fetal Lung	lung
19	chr1:92850800-92853800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:92850800-92855000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:92851200-92854800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:92851200-92855200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:92851200-92855400	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:92851400-92853800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:92851400-92853800	Strong transcription	Fetal Kidney	kidney
26	chr1:92851400-92853800	Strong transcription	Placenta	Placenta
27	chr1:92851400-92853800	Strong transcription	Gastric	stomach
28	chr1:92851400-92853800	Strong transcription	HSMM	muscle
29	chr1:92851400-92853800	Weak transcription	NH-A	brain
30	chr1:92851400-92854000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:92851400-92854000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:92851400-92854000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr1:92851400-92854000	Strong transcription	Dnd41	blood
34	chr1:92851400-92854200	Strong transcription	Small Intestine	intestine
35	chr1:92851400-92854400	Strong transcription	A549	lung
36	chr1:92851400-92854600	Strong transcription	Brain Cingulate Gyrus	brain
37	chr1:92851400-92854600	Strong transcription	Rectal Smooth Muscle	rectum
38	chr1:92851400-92854800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr1:92851400-92854800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:92851400-92854800	ZNF genes & repeats	Ovary	ovary
41	chr1:92851400-92854800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
42	chr1:92851400-92855000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr1:92851400-92855000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr1:92851400-92855000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:92851400-92855000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr1:92851400-92855000	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr1:92851400-92855000	Strong transcription	Brain Substantia Nigra	brain
48	chr1:92851400-92855000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:92851400-92855000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:92851400-92855200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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