Variant report

Variant	rs12402520
Chromosome Location	chr1:210831707-210831708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12057303	0.92[CHB][hapmap]
rs12401476	0.83[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12401932	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12407959	0.83[CHB][hapmap]
rs17016714	0.83[CHB][hapmap];0.86[MEX][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016734	0.83[CHB][hapmap];0.86[MEX][hapmap]
rs17016736	0.81[CHB][hapmap]
rs17016740	0.82[CHB][hapmap]
rs17016743	0.83[CHB][hapmap];0.86[MEX][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016759	0.82[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366378	1.00[EUR][1000 genomes]
rs57937741	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59841008	0.81[ASN][1000 genomes]
rs7516561	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv873151	chr1:210818347-210846888	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv873152	chr1:210820285-210854815	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210821400-210837000	Weak transcription	Left Ventricle	heart
2	chr1:210827400-210837200	Weak transcription	Right Ventricle	heart
3	chr1:210827600-210831800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:210827600-210836400	Weak transcription	Fetal Heart	heart
5	chr1:210827600-210836800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:210827600-210837000	Weak transcription	Gastric	stomach
7	chr1:210827600-210843400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:210827600-210847600	Weak transcription	HSMM	muscle
9	chr1:210829000-210853400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210829800-210831800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:210830000-210831800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:210831600-210833800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:210831600-210835400	Weak transcription	HSMMtube	muscle
14	chr1:210831600-210837000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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