Variant report
Variant | rs12402555 |
---|---|
Chromosome Location | chr1:194053792-194053793 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10494694 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10494695 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11576452 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12407160 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12731751 | 0.90[ASN][1000 genomes] |
rs17550167 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17550564 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs17615197 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs17615410 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs17615584 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17615608 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17615887 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2119856 | 0.95[ASN][1000 genomes] |
rs2119857 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2224700 | 0.90[ASN][1000 genomes] |
rs34886976 | 0.92[ASN][1000 genomes] |
rs35224110 | 0.95[ASN][1000 genomes] |
rs6670107 | 0.90[ASN][1000 genomes] |
rs74131275 | 0.97[ASN][1000 genomes] |
rs74131282 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs74131287 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs74131290 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs74131293 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs74131294 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7511906 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7553854 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs958436 | 0.97[ASN][1000 genomes] |
rs958437 | 0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1001872 | chr1:194030479-194288016 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv872836 | chr1:194032486-194130204 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:194043800-194054000 | Weak transcription | Fetal Heart | heart |
2 | chr1:194053600-194054000 | Enhancers | Colon Smooth Muscle | Colon |