Variant report

Variant	rs12402756
Chromosome Location	chr1:61524263-61524264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:61521000..61524411-chr1:61562125..61565012,3	K562	blood:
2	chr1:61522656..61524631-chr1:61723609..61725253,2	K562	blood:
3	chr1:61513320..61528030-chr1:61539604..61553659,57	K562	blood:
4	chr1:61520693..61524394-chr1:61599232..61603090,3	K562	blood:
5	chr1:61522323..61524411-chr1:61562125..61565012,2	K562	blood:
6	chr1:61493032..61494892-chr1:61523177..61526070,2	K562	blood:
7	chr1:61520265..61526654-chr1:61531787..61535432,7	K562	blood:
8	chr1:61522302..61525777-chr1:61554119..61555915,3	K562	blood:
9	chr1:61512478..61530748-chr1:61539371..61553659,68	K562	blood:
10	chr1:61522141..61524264-chr1:61659818..61661970,2	K562	blood:
11	chr1:61522430..61525145-chr1:61527111..61531293,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000263380	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11207690	0.81[EUR][1000 genomes]
rs11207691	0.81[EUR][1000 genomes]
rs11207692	0.82[CEU][hapmap]
rs12130085	0.82[CEU][hapmap]
rs12402443	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404093	0.82[CEU][hapmap]
rs12404336	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12406426	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs12565220	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17121523	0.81[YRI][hapmap]
rs17121536	0.84[CEU][hapmap]
rs36002894	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61523600-61524400	Enhancers	Liver	Liver
2	chr1:61523600-61524600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:61523600-61524800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:61523600-61524800	Enhancers	Fetal Stomach	stomach
5	chr1:61523600-61528000	Weak transcription	Brain Substantia Nigra	brain
6	chr1:61523800-61524400	Active TSS	Fetal Brain Male	brain
7	chr1:61523800-61524600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:61523800-61524600	Enhancers	NHEK	skin
9	chr1:61523800-61524800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:61523800-61524800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:61523800-61524800	Enhancers	Hela-S3	cervix
12	chr1:61523800-61525000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:61524000-61524400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:61524000-61524600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:61524000-61524600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr1:61524000-61524600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr1:61524000-61524600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr1:61524000-61524600	Enhancers	A549	lung
19	chr1:61524000-61524600	Enhancers	K562	blood
20	chr1:61524200-61524400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:61524200-61524400	Enhancers	Fetal Lung	lung
22	chr1:61524200-61524400	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:61524200-61524600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr1:61524200-61524600	Enhancers	Stomach Smooth Muscle	stomach
25	chr1:61524200-61524600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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