Variant report

Variant	rs12402813
Chromosome Location	chr1:216918267-216918268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10863269	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11117667	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11117668	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11117669	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059942	1.00[ASN][1000 genomes]
rs12070175	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12403401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339350	0.83[CEU][hapmap];0.99[EUR][1000 genomes]
rs17043570	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17043610	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789732	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2789733	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2820875	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2820876	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2820881	1.00[CHB][hapmap]
rs61318304	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819764	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61819766	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61819772	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216916800-216921600	Weak transcription	Fetal Heart	heart
5	chr1:216917800-216918600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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