Variant report

Variant	rs12407389
Chromosome Location	chr1:172892361-172892362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10489274	0.94[EUR][1000 genomes]
rs10753064	0.97[ASN][1000 genomes]
rs10798242	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798243	0.94[EUR][1000 genomes]
rs10912491	0.80[ASN][1000 genomes]
rs10912497	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912499	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12025176	0.80[ASN][1000 genomes]
rs12035082	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037203	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037606	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088638	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097671	0.97[ASN][1000 genomes]
rs12565596	0.82[ASN][1000 genomes]
rs12739009	1.00[JPT][hapmap]
rs12748081	0.80[ASN][1000 genomes]
rs1883475	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1894636	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051629	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2179425	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2187893	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2206364	0.90[EUR][1000 genomes]
rs2213746	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227203	1.00[ASN][1000 genomes]
rs2422257	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2422260	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35715673	0.80[ASN][1000 genomes]
rs4145468	0.80[ASN][1000 genomes]
rs4145469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916199	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916282	0.82[ASN][1000 genomes]
rs4916285	1.00[JPT][hapmap]
rs4916286	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916288	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5028523	0.91[ASN][1000 genomes]
rs6425189	0.82[EUR][1000 genomes]
rs6668693	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6674470	0.95[EUR][1000 genomes]
rs6688532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517726	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7527986	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7528161	0.85[ASN][1000 genomes]
rs7539319	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926472	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926473	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926474	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283384	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172888000-172897200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:172888200-172895600	Weak transcription	Osteobl	bone
3	chr1:172888400-172897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:172888800-172897400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172889400-172895600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:172889400-172897000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:172889400-172897000	Weak transcription	HMEC	breast
8	chr1:172889400-172897200	Weak transcription	HUVEC	blood vessel
9	chr1:172889400-172897200	Weak transcription	NHDF-Ad	bronchial
10	chr1:172889600-172896200	Weak transcription	HSMM	muscle
11	chr1:172890400-172896600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:172890400-172897200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:172890800-172897400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:172891000-172895800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:172891000-172896600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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