Variant report

Variant	rs12407585
Chromosome Location	chr1:220625892-220625893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12025515	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12032166	0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs12048541	0.81[JPT][hapmap]
rs12123146	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12405059	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12407611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568419	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12726257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17007885	0.81[JPT][hapmap]
rs3849283	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4354541	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220624200-220626200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:220624600-220627000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:220624600-220627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:220624600-220627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:220624800-220629000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:220625200-220629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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