The 2.0 version of rSNPBase

Variant report

Variant rs12408093
Chromosome Location chr1:220828220-220828221
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220778800-220837200 Weak transcription NHEK skin
2 chr1:220784200-220836600 Weak transcription Fetal Lung lung
3 chr1:220791200-220828600 Weak transcription Right Ventricle heart
4 chr1:220791200-220841200 Weak transcription HMEC breast
5 chr1:220792000-220834200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:220798000-220836400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:220800000-220837800 Weak transcription Esophagus oesophagus
8 chr1:220807400-220829800 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:220807800-220828800 Weak transcription Colon Smooth Muscle Colon
10 chr1:220807800-220836400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:220813600-220836000 Weak transcription Brain Cingulate Gyrus brain
12 chr1:220815800-220837200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:220816200-220836200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:220816600-220834200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:220816600-220836000 Weak transcription Fetal Kidney kidney
16 chr1:220819800-220828800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:220820400-220836600 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:220821600-220834600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:220822000-220836800 Weak transcription Pancreas Pancrea
20 chr1:220823200-220828800 Strong transcription iPS-20b Cell Line embryonic stem cell
21 chr1:220823200-220829800 Strong transcription Cortex derived primary cultured neurospheres brain
22 chr1:220823200-220835800 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr1:220823400-220829600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:220823400-220830400 Strong transcription HUES64 Cell Line embryonic stem cell
25 chr1:220823400-220830600 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr1:220823400-220835600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:220823800-220831000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:220824800-220829800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:220825400-220830600 Strong transcription Adipose Nuclei Adipose
30 chr1:220825600-220836200 Weak transcription Brain Hippocampus Middle brain
31 chr1:220825800-220828600 Weak transcription Rectal Smooth Muscle rectum
32 chr1:220826200-220830600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:220826400-220828400 Weak transcription Fetal Brain Male brain
34 chr1:220826400-220828600 Strong transcription H9 Cell Line embryonic stem cell
35 chr1:220826400-220829200 Strong transcription Left Ventricle heart
36 chr1:220826400-220829400 Strong transcription Duodenum Smooth Muscle Duodenum
37 chr1:220826400-220829600 Strong transcription Fetal Muscle Trunk muscle
38 chr1:220826400-220829600 Strong transcription Fetal Muscle Leg muscle
39 chr1:220826600-220828800 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:220826600-220828800 Weak transcription Brain Angular Gyrus brain
41 chr1:220826600-220829600 Weak transcription Duodenum Mucosa Duodenum
42 chr1:220826800-220828400 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:220826800-220828600 Weak transcription Fetal Stomach stomach
44 chr1:220827000-220829400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr1:220827000-220829400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:220827000-220829400 Strong transcription Aorta Aorta
47 chr1:220827000-220829400 Strong transcription Stomach Smooth Muscle stomach
48 chr1:220827000-220829800 Strong transcription Brain Anterior Caudate brain
49 chr1:220827000-220831400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:220827200-220829600 Enhancers Fetal Heart heart

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Last update: Aug 31, 2015