The 2.0 version of rSNPBase

Variant report

Variant rs12408109
Chromosome Location chr1:94218153-94218154
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94215600-94218200 Enhancers Adipose Nuclei Adipose
2 chr1:94215600-94218400 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr1:94215600-94218400 Enhancers Left Ventricle heart
4 chr1:94215600-94218400 Enhancers Right Ventricle heart
5 chr1:94215600-94218800 Bivalent Enhancer Fetal Heart heart
6 chr1:94215600-94219200 Enhancers Colon Smooth Muscle Colon
7 chr1:94215600-94219400 Enhancers Hela-S3 cervix
8 chr1:94215600-94220000 Enhancers Skeletal Muscle Female skeletal muscle
9 chr1:94215600-94220600 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr1:94215800-94218400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:94215800-94220200 Enhancers Fetal Lung lung
12 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:94216200-94218800 Weak transcription A549 lung
14 chr1:94216200-94219800 Enhancers Psoas Muscle Psoas
15 chr1:94216200-94219800 Weak transcription Stomach Smooth Muscle stomach
16 chr1:94216200-94220000 Genic enhancers HMEC breast
17 chr1:94216400-94219400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:94216400-94219400 Enhancers HSMM muscle
19 chr1:94216400-94223800 Weak transcription Fetal Intestine Small intestine
20 chr1:94216600-94218200 Enhancers HSMMtube muscle
21 chr1:94216600-94218400 Enhancers Cortex derived primary cultured neurospheres brain
22 chr1:94216600-94218400 Enhancers Rectal Smooth Muscle rectum
23 chr1:94216600-94220600 Enhancers Placenta Placenta
24 chr1:94216800-94219000 Weak transcription HUVEC blood vessel
25 chr1:94216800-94219400 Enhancers Muscle Satellite Cultured Cells --
26 chr1:94216800-94221200 Weak transcription Fetal Intestine Large intestine
27 chr1:94216800-94223000 Enhancers Osteobl bone
28 chr1:94216800-94224400 Weak transcription Right Atrium heart
29 chr1:94217200-94218200 Enhancers NHDF-Ad bronchial
30 chr1:94217200-94218400 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:94217200-94218600 Weak transcription HepG2 liver
32 chr1:94217200-94219600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:94217200-94221600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:94217400-94219400 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:94217400-94219400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:94217400-94219600 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:94217400-94220600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:94217600-94218800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:94217600-94218800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:94217600-94219000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:94217600-94219000 Weak transcription NHEK skin
42 chr1:94217600-94219200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:94217600-94219200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:94217600-94223200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
45 chr1:94217800-94218800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:94217800-94218800 Weak transcription NHLF lung
47 chr1:94217800-94219000 Weak transcription Spleen Spleen
48 chr1:94217800-94219200 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:94217800-94219400 Weak transcription Aorta Aorta
50 chr1:94218000-94218400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015