The 2.0 version of rSNPBase

Variant report

Variant rs12408402
Chromosome Location chr1:94218541-94218542
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94215600-94218800 Bivalent Enhancer Fetal Heart heart
2 chr1:94215600-94219200 Enhancers Colon Smooth Muscle Colon
3 chr1:94215600-94219400 Enhancers Hela-S3 cervix
4 chr1:94215600-94220000 Enhancers Skeletal Muscle Female skeletal muscle
5 chr1:94215600-94220600 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr1:94215800-94220200 Enhancers Fetal Lung lung
7 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:94216200-94218800 Weak transcription A549 lung
9 chr1:94216200-94219800 Enhancers Psoas Muscle Psoas
10 chr1:94216200-94219800 Weak transcription Stomach Smooth Muscle stomach
11 chr1:94216200-94220000 Genic enhancers HMEC breast
12 chr1:94216400-94219400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:94216400-94219400 Enhancers HSMM muscle
14 chr1:94216400-94223800 Weak transcription Fetal Intestine Small intestine
15 chr1:94216600-94220600 Enhancers Placenta Placenta
16 chr1:94216800-94219000 Weak transcription HUVEC blood vessel
17 chr1:94216800-94219400 Enhancers Muscle Satellite Cultured Cells --
18 chr1:94216800-94221200 Weak transcription Fetal Intestine Large intestine
19 chr1:94216800-94223000 Enhancers Osteobl bone
20 chr1:94216800-94224400 Weak transcription Right Atrium heart
21 chr1:94217200-94218600 Weak transcription HepG2 liver
22 chr1:94217200-94219600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:94217200-94221600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr1:94217400-94219400 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:94217400-94219400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:94217400-94219600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:94217400-94220600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:94217600-94218800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:94217600-94218800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:94217600-94219000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:94217600-94219000 Weak transcription NHEK skin
32 chr1:94217600-94219200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:94217600-94219200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:94217600-94223200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:94217800-94218800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:94217800-94218800 Weak transcription NHLF lung
37 chr1:94217800-94219000 Weak transcription Spleen Spleen
38 chr1:94217800-94219200 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr1:94217800-94219400 Weak transcription Aorta Aorta
40 chr1:94218000-94218600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:94218000-94219000 Weak transcription Fetal Thymus thymus
42 chr1:94218000-94219000 Weak transcription Lung lung
43 chr1:94218000-94219200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:94218000-94219200 Weak transcription Brain Hippocampus Middle brain
45 chr1:94218000-94219400 Weak transcription Brain Cingulate Gyrus brain
46 chr1:94218000-94219600 Weak transcription Esophagus oesophagus
47 chr1:94218000-94220000 Enhancers Skeletal Muscle Male skeletal muscle
48 chr1:94218000-94222400 Weak transcription Fetal Muscle Leg muscle
49 chr1:94218000-94222600 Weak transcription Fetal Muscle Trunk muscle
50 chr1:94218000-94222800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015