The 2.0 version of rSNPBase

Variant report

Variant rs1240939
Chromosome Location chr1:85908649-85908650
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85886400-85914200 Weak transcription HSMMtube muscle
2 chr1:85893800-85916800 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr1:85899200-85914800 Weak transcription Esophagus oesophagus
4 chr1:85901400-85923000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:85902600-85912200 Weak transcription Pancreas Pancrea
6 chr1:85904400-85914800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:85904600-85910200 Weak transcription Fetal Intestine Large intestine
8 chr1:85905000-85910200 Weak transcription Fetal Intestine Small intestine
9 chr1:85905000-85912400 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr1:85905200-85912000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:85905200-85912600 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr1:85905200-85912800 Weak transcription Left Ventricle heart
13 chr1:85905200-85913000 Weak transcription Fetal Kidney kidney
14 chr1:85905200-85914800 Weak transcription Small Intestine intestine
15 chr1:85905400-85913400 Weak transcription Fetal Lung lung
16 chr1:85906200-85910200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr1:85906200-85912400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr1:85906600-85910200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:85906600-85910200 Weak transcription HSMM muscle
20 chr1:85906800-85910000 Weak transcription NH-A brain
21 chr1:85906800-85910200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:85906800-85910200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:85906800-85912800 Weak transcription Adipose Nuclei Adipose
24 chr1:85906800-85913000 Weak transcription Colon Smooth Muscle Colon
25 chr1:85906800-85914200 Weak transcription Ovary ovary
26 chr1:85907000-85910200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:85907000-85910200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:85907000-85913400 Weak transcription HepG2 liver
29 chr1:85907000-85914200 Weak transcription Fetal Muscle Leg muscle
30 chr1:85907000-85914600 Weak transcription Fetal Stomach stomach
31 chr1:85907000-85914800 Weak transcription Aorta Aorta
32 chr1:85907000-85914800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:85907000-85919600 Weak transcription Right Atrium heart
34 chr1:85907200-85909800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:85907200-85910000 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:85907200-85910000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:85907200-85910200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:85907200-85911400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:85907200-85912200 Weak transcription Liver Liver
40 chr1:85907200-85912200 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr1:85907200-85912800 Weak transcription Psoas Muscle Psoas
42 chr1:85907400-85910000 Weak transcription Osteobl bone
43 chr1:85907400-85912200 Weak transcription HUVEC blood vessel
44 chr1:85907400-85912200 Weak transcription NHLF lung
45 chr1:85907600-85910000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:85907600-85911200 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015