Variant report

Variant	rs12410041
Chromosome Location	chr1:215286680-215286681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215249267..215251952-chr1:215286200..215288230,2	MCF-7	breast:
2	chr1:215285008..215287414-chr1:215293521..215295333,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10127521	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10127656	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10746454	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10746455	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10779639	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs10779640	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10779643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10779644	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10779645	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs10779646	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10779647	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10779649	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10779650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10779651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10779652	0.88[ASN][1000 genomes]
rs10864150	0.80[CEU][hapmap]
rs10864152	0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs10864153	0.81[ASN][1000 genomes]
rs10864154	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10864157	0.84[ASN][1000 genomes]
rs11120495	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11120496	0.83[ASN][1000 genomes]
rs11120497	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11120498	0.84[ASN][1000 genomes]
rs11120499	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs11120500	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120506	0.82[ASN][1000 genomes]
rs11120508	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs11120511	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs11120513	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs11120516	0.82[ASN][1000 genomes]
rs1112101	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12031308	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs12039875	0.90[CHB][hapmap]
rs12061916	0.84[ASN][1000 genomes]
rs12062098	0.90[ASN][1000 genomes]
rs12068734	0.82[ASN][1000 genomes]
rs12120091	0.91[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12121761	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs12135076	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12138497	0.95[ASN][1000 genomes]
rs12141874	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143339	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs12411068	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12567520	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs12740245	0.85[CHB][hapmap]
rs12742137	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12753507	0.84[CHB][hapmap]
rs1339405	0.91[CHB][hapmap]
rs1339406	0.90[CHB][hapmap]
rs1361340	0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416647	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1578137	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2027320	0.84[CHB][hapmap]
rs2363554	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2363556	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2363557	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2363558	0.81[AMR][1000 genomes]
rs2363559	0.81[AMR][1000 genomes]
rs2363564	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2363565	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs2363566	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2363567	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2885812	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs2885813	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2885815	0.84[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3931584	0.81[ASN][1000 genomes]
rs3931585	0.84[ASN][1000 genomes]
rs4262516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4269745	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4271184	0.86[CHB][hapmap]
rs4300189	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303048	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4375232	0.83[CEU][hapmap];0.90[CHB][hapmap];0.97[EUR][1000 genomes]
rs4411107	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs4428856	0.84[ASN][1000 genomes]
rs4497183	0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4509552	0.82[ASN][1000 genomes]
rs4509553	0.90[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4531266	0.84[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4548407	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4556330	0.86[CHB][hapmap]
rs4571941	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4573492	0.84[ASN][1000 genomes]
rs4607848	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655276	0.82[ASN][1000 genomes]
rs4655277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4655278	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655391	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4655392	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4655393	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4655395	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61818297	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61818299	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61818320	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818328	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6657313	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6662353	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666828	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs6667764	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs6672978	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6673739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6675926	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6678758	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6683041	0.84[ASN][1000 genomes]
rs6684084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6688713	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs6695343	0.87[ASN][1000 genomes]
rs6695967	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6696333	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699161	0.95[CHB][hapmap]
rs72735359	0.98[ASN][1000 genomes]
rs7410928	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7417100	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs7513709	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516689	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs7540029	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7541543	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7547572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7547655	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7549136	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs7551415	0.80[ASN][1000 genomes]
rs9793382	0.87[ASN][1000 genomes]
rs9793690	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215281600-215287400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:215283400-215291200	Weak transcription	Fetal Brain Female	brain
3	chr1:215285400-215287000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215285400-215287200	Enhancers	Osteobl	bone
5	chr1:215285400-215287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:215285600-215286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:215285600-215287000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:215285600-215287200	Weak transcription	NHLF	lung
9	chr1:215285800-215286800	Weak transcription	HMEC	breast
10	chr1:215286400-215287200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:215286600-215287200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:215286600-215287200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:215286600-215287200	Enhancers	HUVEC	blood vessel
14	chr1:215286600-215287400	Enhancers	NHDF-Ad	bronchial
15	chr1:215286600-215289000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:215286600-215289000	Enhancers	NHEK	skin

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