Variant report

Variant	rs12410367
Chromosome Location	chr1:94234658-94234659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94230167..94233599-chr1:94234522..94237747,3	K562	blood:
2	chr1:94230247..94233265-chr1:94234348..94236266,3	K562	blood:
3	chr1:94232434..94235361-chr1:94242307..94244423,2	K562	blood:
4	chr1:94223826..94225778-chr1:94232958..94235783,2	MCF-7	breast:

Extended variants
information (count: 219 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:219)

rs_ID	r²[population]
rs10158125	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10158155	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10158448	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10158745	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10443194	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10489601	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164975	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11164976	0.91[ASN][1000 genomes]
rs11164977	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164979	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164980	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164981	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164982	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164983	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164984	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164985	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164986	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11164987	0.95[ASN][1000 genomes]
rs11164988	0.95[ASN][1000 genomes]
rs11164989	0.95[ASN][1000 genomes]
rs11164990	0.95[ASN][1000 genomes]
rs11164991	0.95[ASN][1000 genomes]
rs11164992	0.95[ASN][1000 genomes]
rs11164995	0.86[ASN][1000 genomes]
rs11164997	0.86[ASN][1000 genomes]
rs11164998	0.86[ASN][1000 genomes]
rs11164999	0.86[ASN][1000 genomes]
rs11165000	0.86[ASN][1000 genomes]
rs11165005	0.82[ASN][1000 genomes]
rs11165014	0.81[ASN][1000 genomes]
rs11165017	0.82[ASN][1000 genomes]
rs11800779	0.95[ASN][1000 genomes]
rs11808807	0.86[ASN][1000 genomes]
rs12116529	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12116907	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12119101	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12119150	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12119418	0.95[ASN][1000 genomes]
rs12119582	0.95[ASN][1000 genomes]
rs12121376	0.95[ASN][1000 genomes]
rs12121513	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12122406	0.86[EUR][1000 genomes]
rs12122531	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12122571	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12122871	0.95[ASN][1000 genomes]
rs12123641	0.81[ASN][1000 genomes]
rs12124077	0.95[ASN][1000 genomes]
rs12125068	0.86[ASN][1000 genomes]
rs12126015	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12126315	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12126518	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12126805	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12128184	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12128215	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12128353	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12128463	0.86[ASN][1000 genomes]
rs12129080	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12130017	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12130252	0.83[ASN][1000 genomes]
rs12130369	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12130623	0.82[EUR][1000 genomes]
rs12130680	0.95[ASN][1000 genomes]
rs12131932	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12132025	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12132181	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12132405	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12132569	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12132625	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12133653	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12133741	0.84[ASN][1000 genomes]
rs12134159	0.86[ASN][1000 genomes]
rs12135187	0.86[ASN][1000 genomes]
rs12137698	0.82[ASN][1000 genomes]
rs12139144	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12139153	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12139561	0.82[ASN][1000 genomes]
rs12139968	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12140344	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12140496	0.83[AMR][1000 genomes]
rs12141014	0.82[ASN][1000 genomes]
rs12141212	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12141335	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12143397	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12143845	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12143888	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12144059	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12144131	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12144135	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12144176	0.82[ASN][1000 genomes]
rs12240145	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12401354	0.86[EUR][1000 genomes]
rs12402433	0.93[ASN][1000 genomes]
rs12402802	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12402983	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12404613	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12404896	0.86[ASN][1000 genomes]
rs12404925	0.86[ASN][1000 genomes]
rs12405302	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12405560	0.93[ASN][1000 genomes]
rs12405984	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12406037	0.86[ASN][1000 genomes]
rs12406729	0.84[ASN][1000 genomes]
rs12407244	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12407550	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12407732	0.82[ASN][1000 genomes]
rs12407917	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12407922	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408089	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408109	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408194	0.82[ASN][1000 genomes]
rs12408402	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408537	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408575	0.86[ASN][1000 genomes]
rs12408629	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12408650	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12408797	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12409459	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12409471	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12410084	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12410101	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12410106	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12410985	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12410986	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12411043	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12411056	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12725087	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12745866	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12745888	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17100392	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110404	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17110411	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17110423	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17110458	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17110469	0.95[ASN][1000 genomes]
rs17110493	0.86[ASN][1000 genomes]
rs17110498	0.86[ASN][1000 genomes]
rs1848	0.98[ASN][1000 genomes]
rs1851	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1852	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1980084	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1985243	0.86[ASN][1000 genomes]
rs2143993	0.86[EUR][1000 genomes]
rs2143996	0.86[ASN][1000 genomes]
rs2143997	0.85[ASN][1000 genomes]
rs2391286	0.87[ASN][1000 genomes]
rs34028800	0.86[ASN][1000 genomes]
rs34761423	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3761915	0.86[ASN][1000 genomes]
rs3935320	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3935334	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4281327	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4348734	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4354545	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4357541	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4468172	0.82[ASN][1000 genomes]
rs4488046	0.84[ASN][1000 genomes]
rs55897737	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56339503	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56872721	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56939682	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57288295	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57397759	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57451717	0.82[ASN][1000 genomes]
rs57553733	0.95[ASN][1000 genomes]
rs57665774	0.94[ASN][1000 genomes]
rs57708386	0.95[ASN][1000 genomes]
rs57787039	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57812682	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57962863	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58880811	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59048850	0.95[ASN][1000 genomes]
rs59873068	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59972811	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59994448	0.86[ASN][1000 genomes]
rs60299665	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60546652	0.86[ASN][1000 genomes]
rs60661913	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60699147	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60807390	0.86[ASN][1000 genomes]
rs61024563	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61244553	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61581292	0.95[ASN][1000 genomes]
rs61658150	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6541395	0.95[ASN][1000 genomes]
rs6664046	0.86[ASN][1000 genomes]
rs6671880	0.86[ASN][1000 genomes]
rs6684128	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6684389	0.95[ASN][1000 genomes]
rs6688926	0.86[ASN][1000 genomes]
rs6688941	0.85[ASN][1000 genomes]
rs6691888	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6692107	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs717910	0.92[EUR][1000 genomes]
rs717912	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74101503	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs74101510	0.95[ASN][1000 genomes]
rs74101512	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74101544	0.95[ASN][1000 genomes]
rs74101547	0.86[ASN][1000 genomes]
rs74101548	0.86[ASN][1000 genomes]
rs74101551	0.86[ASN][1000 genomes]
rs74101571	0.84[ASN][1000 genomes]
rs74101687	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74101688	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs74101698	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74101702	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74104105	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74104130	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74104131	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7515209	0.95[ASN][1000 genomes]
rs7532168	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7540800	0.95[ASN][1000 genomes]
rs7546315	0.86[ASN][1000 genomes]
rs7548162	0.95[ASN][1000 genomes]
rs7550590	0.85[ASN][1000 genomes]
rs7553438	0.85[ASN][1000 genomes]
rs765920	0.95[ASN][1000 genomes]
rs960625	0.86[ASN][1000 genomes]
rs960626	0.86[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94223000-94237000	Weak transcription	NHEK	skin
3	chr1:94231600-94236000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:94231600-94236200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:94231600-94236200	Enhancers	Fetal Thymus	thymus
6	chr1:94233400-94235400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:94233400-94235800	Enhancers	Placenta	Placenta
8	chr1:94233400-94236000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:94233400-94236200	Enhancers	Fetal Intestine Large	intestine
10	chr1:94233600-94234800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:94233600-94234800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:94233600-94234800	Enhancers	Psoas Muscle	Psoas
13	chr1:94233600-94235000	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:94233600-94235000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:94233600-94235000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:94233600-94235000	Enhancers	Lung	lung
17	chr1:94233600-94235000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:94233600-94235000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr1:94233600-94235000	Enhancers	HSMMtube	muscle
20	chr1:94233600-94235200	Enhancers	NHDF-Ad	bronchial
21	chr1:94233600-94235400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:94233600-94235400	Enhancers	Brain Anterior Caudate	brain
23	chr1:94233600-94235400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr1:94233600-94235400	Enhancers	Hela-S3	cervix
25	chr1:94233600-94235600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:94233600-94235600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr1:94233600-94235600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:94233600-94235800	Enhancers	Right Atrium	heart
29	chr1:94233600-94236000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:94233600-94236000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:94233600-94236000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:94233600-94236000	Enhancers	Adipose Nuclei	Adipose
33	chr1:94233600-94236000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr1:94233600-94236000	Enhancers	Fetal Muscle Trunk	muscle
35	chr1:94233600-94236000	Enhancers	Fetal Muscle Leg	muscle
36	chr1:94233600-94236000	Enhancers	Ovary	ovary
37	chr1:94233600-94236200	Enhancers	Fetal Intestine Small	intestine
38	chr1:94233600-94238000	Genic enhancers	HMEC	breast
39	chr1:94233600-94239000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:94233800-94234800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:94233800-94234800	Enhancers	Fetal Stomach	stomach
42	chr1:94233800-94234800	Enhancers	Stomach Smooth Muscle	stomach
43	chr1:94233800-94235000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:94233800-94235000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:94233800-94235000	Enhancers	Osteobl	bone
46	chr1:94233800-94235200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:94233800-94235400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr1:94233800-94235600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr1:94233800-94235600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr1:94233800-94235600	Enhancers	Fetal Lung	lung

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