The 2.0 version of rSNPBase

Variant report

Variant rs12411259
Chromosome Location chr1:172866210-172866211
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172862800-172866800 Weak transcription HMEC breast
2 chr1:172864400-172867400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:172864600-172867000 Weak transcription NH-A brain
4 chr1:172864800-172870000 Enhancers HUVEC blood vessel
5 chr1:172865000-172868600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:172865000-172871200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:172865200-172866600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:172865200-172866600 Weak transcription NHDF-Ad bronchial
9 chr1:172865200-172866800 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:172865200-172866800 Weak transcription NHEK skin
11 chr1:172865200-172867000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr1:172865200-172868000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:172865200-172868200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:172865200-172868400 Weak transcription Primary hematopoietic stem cells blood
15 chr1:172865200-172868400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:172865200-172868600 Weak transcription Primary B cells from peripheral blood blood
17 chr1:172865200-172868800 Weak transcription Primary B cells from cord blood blood
18 chr1:172865200-172870400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:172865200-172870400 Weak transcription HSMMtube muscle
20 chr1:172865200-172871400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr1:172865200-172872200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:172865200-172872200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:172865200-172875200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:172865400-172866600 Weak transcription Muscle Satellite Cultured Cells --
25 chr1:172865400-172867800 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr1:172865400-172868000 Enhancers A549 lung
27 chr1:172865400-172869600 Weak transcription Dnd41 blood
28 chr1:172865600-172866600 Weak transcription Osteobl bone
29 chr1:172865600-172866800 Weak transcription HSMM muscle
30 chr1:172865600-172868000 Weak transcription Primary T cells from cord blood blood
31 chr1:172865600-172868200 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:172865600-172868400 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:172865600-172869400 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr1:172865600-172869600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr1:172865600-172869600 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:172865600-172869600 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:172865600-172874600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:172865800-172867000 Weak transcription NHLF lung
39 chr1:172865800-172875200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:172865800-172878400 Weak transcription Placenta Amnion Placenta Amnion
41 chr1:172866200-172866600 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015