Variant report

Variant	rs12412298
Chromosome Location	chr10:49798637-49798638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857607	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11591884	0.84[EUR][1000 genomes]
rs1345107	0.86[EUR][1000 genomes]
rs1965169	0.86[EUR][1000 genomes]
rs2377517	0.86[EUR][1000 genomes]
rs61838376	0.84[EUR][1000 genomes]
rs61838387	0.83[EUR][1000 genomes]
rs7079932	0.83[EUR][1000 genomes]
rs935286	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1046588	chr10:49790254-49806169	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
2	chr10:49794800-49799200	Enhancers	Brain Hippocampus Middle	brain
3	chr10:49795000-49799400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:49795200-49803800	Enhancers	NHDF-Ad	bronchial
5	chr10:49795600-49798800	Genic enhancers	NHLF	lung
6	chr10:49795800-49798800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:49795800-49798800	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:49795800-49798800	Enhancers	HMEC	breast
9	chr10:49796200-49799200	Enhancers	Fetal Stomach	stomach
10	chr10:49796200-49800600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:49796400-49799000	Enhancers	Brain Angular Gyrus	brain
12	chr10:49796600-49799000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:49796800-49799200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:49796800-49799400	Enhancers	HUVEC	blood vessel
15	chr10:49797400-49799400	Enhancers	HSMM	muscle
16	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
17	chr10:49797600-49798800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
18	chr10:49797800-49799400	Enhancers	NH-A	brain
19	chr10:49797800-49802600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:49798000-49798800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:49798000-49799200	Enhancers	Osteobl	bone
22	chr10:49798000-49799400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:49798000-49799600	Genic enhancers	Muscle Satellite Cultured Cells	--
24	chr10:49798400-49798800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:49798400-49801600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:49798400-49802200	Weak transcription	Esophagus	oesophagus
27	chr10:49798400-49802400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:49798400-49802600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:49798600-49802400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:49798600-49805600	Weak transcription	HSMMtube	muscle

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