Variant report

Variant	rs12413622
Chromosome Location	chr10:4121457-4121458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4116566..4118827-chr10:4119100..4121820,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11252318	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774305	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257679	0.85[ASN][1000 genomes]
rs4880665	0.85[ASN][1000 genomes]
rs723220	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4112000-4122000	Weak transcription	Spleen	Spleen
2	chr10:4112000-4124600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:4115400-4123400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:4116200-4124000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:4117000-4122000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:4117000-4124000	Weak transcription	HSMMtube	muscle
7	chr10:4117000-4125400	Weak transcription	Psoas Muscle	Psoas
8	chr10:4117000-4125600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:4117200-4122600	Weak transcription	Right Ventricle	heart
10	chr10:4117200-4124000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:4117200-4125400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:4117200-4126200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:4117400-4121800	Weak transcription	HUVEC	blood vessel
14	chr10:4117400-4122600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:4117400-4123800	Weak transcription	Right Atrium	heart
16	chr10:4117400-4123800	Weak transcription	Small Intestine	intestine
17	chr10:4117400-4124000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:4117800-4122200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:4117800-4123600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:4117800-4123800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:4117800-4123800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:4117800-4123800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:4117800-4123800	Weak transcription	Left Ventricle	heart
24	chr10:4117800-4124200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:4118000-4121600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:4118000-4122200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:4118000-4123600	Weak transcription	Fetal Heart	heart
28	chr10:4118000-4126000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:4118000-4126000	Weak transcription	NHEK	skin
30	chr10:4118200-4122000	Weak transcription	Dnd41	blood
31	chr10:4119200-4124200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr10:4119600-4123400	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:4119600-4123800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:4119800-4121600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:4119800-4122600	Weak transcription	NHDF-Ad	bronchial
36	chr10:4119800-4124200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:4119800-4124200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr10:4120000-4123800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:4120800-4121600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:4120800-4122600	Weak transcription	Fetal Thymus	thymus
41	chr10:4120800-4125200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:4121400-4123000	Enhancers	Primary T cells from cord blood	blood
43	chr10:4121400-4123200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr10:4121400-4124000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr10:4121400-4124000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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