Variant report

Variant	rs12416239
Chromosome Location	chr10:118087220-118087221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10490910	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197615	0.81[JPT][hapmap];0.82[TSI][hapmap]
rs11816383	0.81[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes]
rs11817085	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11817803	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414617	0.83[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12416076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12416567	0.80[AMR][1000 genomes]
rs1419870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1419872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17094490	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs17094504	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17094520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1894789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2074986	0.83[TSI][hapmap]
rs2286630	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532688	0.91[TSI][hapmap]
rs35997739	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41384349	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs41386650	0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4320877	0.83[TSI][hapmap]
rs4508123	0.81[AFR][1000 genomes]
rs4636575	1.00[ASW][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.83[LWK][hapmap];0.82[YRI][hapmap]
rs58693853	0.96[ASN][1000 genomes]
rs6585390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs73373021	0.82[AMR][1000 genomes]
rs73373031	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73374910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902111	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs8192661	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1047591	chr10:118087220-118126822	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118085600-118087400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:118086800-118087600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:118087200-118087400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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