Variant report

Variant	rs12416695
Chromosome Location	chr11:10300892-10300893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10299602..10302497-chr11:10324865..10327028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10770103	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840375	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10840377	0.90[EUR][1000 genomes]
rs11042618	1.00[ASN][1000 genomes]
rs11042623	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	1.00[ASN][1000 genomes]
rs11042683	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11042731	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599958	1.00[ASN][1000 genomes]
rs11600251	0.81[EUR][1000 genomes]
rs11600489	0.82[EUR][1000 genomes]
rs11606561	0.81[EUR][1000 genomes]
rs11607682	1.00[ASN][1000 genomes]
rs11607703	1.00[ASN][1000 genomes]
rs12360783	0.85[EUR][1000 genomes]
rs12362060	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12362938	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12418212	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12418514	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418619	1.00[ASN][1000 genomes]
rs12420122	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12420640	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421179	1.00[ASN][1000 genomes]
rs12421931	1.00[ASN][1000 genomes]
rs1372808	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1442737	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17359113	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1822291	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1822292	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1867135	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2044782	1.00[ASN][1000 genomes]
rs2167169	1.00[ASN][1000 genomes]
rs2197171	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2403292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34683105	0.89[EUR][1000 genomes]
rs4271380	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4281477	0.89[EUR][1000 genomes]
rs4345958	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385889	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4519084	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4643073	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910095	0.89[EUR][1000 genomes]
rs4910098	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788918	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55923001	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56853694	0.83[EUR][1000 genomes]
rs61878587	1.00[ASN][1000 genomes]
rs61878622	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	1.00[ASN][1000 genomes]
rs61889838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891765	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104093	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123453	0.81[EUR][1000 genomes]
rs7924875	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7931804	1.00[ASN][1000 genomes]
rs7935774	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7935934	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7938491	0.83[EUR][1000 genomes]
rs7945980	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7948215	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7950447	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
5	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
6	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
7	chr11:10291200-10313600	Weak transcription	NHEK	skin
8	chr11:10291200-10314400	Weak transcription	HSMM	muscle
9	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:10295600-10306600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10295600-10307000	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:10295800-10304200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:10296800-10306600	Weak transcription	NHDF-Ad	bronchial
16	chr11:10297000-10306200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10297000-10309600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:10297800-10303200	Weak transcription	Hela-S3	cervix
19	chr11:10297800-10309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:10298200-10306000	Weak transcription	A549	lung
21	chr11:10298200-10307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10298400-10306200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:10299200-10304600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10299400-10308600	Weak transcription	NHLF	lung
26	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
27	chr11:10299600-10310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:10300600-10302200	Weak transcription	Fetal Intestine Small	intestine

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