Variant report

Variant rs12417519
Chromosome Location chr11:47129397-47129398
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:47121200-47130600 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr11:47121200-47132600 Weak transcription Fetal Adrenal Gland Adrenal Gland
3 chr11:47121600-47140200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr11:47122400-47140400 Weak transcription Pancreas Pancrea
5 chr11:47123000-47132600 Enhancers Cortex derived primary cultured neurospheres brain
6 chr11:47124600-47132800 Weak transcription Thymus Thymus
7 chr11:47124600-47133000 Weak transcription Fetal Thymus thymus
8 chr11:47124600-47159000 Weak transcription Primary T cells from cord blood blood
9 chr11:47125200-47129400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr11:47125200-47132400 Enhancers Fetal Muscle Leg muscle
11 chr11:47125400-47133400 Enhancers Fetal Lung lung
12 chr11:47125800-47129400 Enhancers Fetal Intestine Small intestine
13 chr11:47126400-47132000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr11:47126600-47130800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr11:47126600-47133200 Weak transcription Placenta Amnion Placenta Amnion
16 chr11:47126800-47129400 Weak transcription Fetal Brain Female brain
17 chr11:47126800-47129600 Weak transcription NHLF lung
18 chr11:47126800-47130600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr11:47126800-47130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr11:47126800-47130600 Weak transcription NHDF-Ad bronchial
21 chr11:47126800-47130800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr11:47126800-47130800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr11:47126800-47130800 Weak transcription NH-A brain
24 chr11:47126800-47131000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr11:47126800-47131200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr11:47127000-47130800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr11:47127000-47131200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr11:47127400-47129400 Weak transcription Placenta Placenta
29 chr11:47127400-47130600 Weak transcription HSMM muscle
30 chr11:47127600-47132200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
31 chr11:47127600-47133400 Enhancers Fetal Brain Male brain
32 chr11:47128000-47129400 Enhancers Duodenum Smooth Muscle Duodenum
33 chr11:47128000-47131800 Enhancers Fetal Stomach stomach
34 chr11:47128400-47129400 Flanking Active TSS Brain Substantia Nigra brain
35 chr11:47128400-47130000 Enhancers Sigmoid Colon Sigmoid Colon
36 chr11:47128400-47132800 Weak transcription Fetal Intestine Large intestine
37 chr11:47128400-47133000 Weak transcription Lung lung
38 chr11:47128600-47130000 Enhancers Fetal Muscle Trunk muscle
39 chr11:47128600-47131000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr11:47128600-47131000 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr11:47128600-47140600 Weak transcription NHEK skin
42 chr11:47128800-47129600 Weak transcription GM12878-XiMat blood
43 chr11:47128800-47130800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr11:47128800-47131000 Weak transcription Fetal Kidney kidney
45 chr11:47128800-47132400 Enhancers Brain Angular Gyrus brain
46 chr11:47128800-47143400 Weak transcription Gastric stomach
47 chr11:47129000-47130000 Strong transcription Hela-S3 cervix
48 chr11:47129000-47130200 Enhancers Brain Germinal Matrix brain
49 chr11:47129000-47130800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr11:47129000-47130800 Weak transcription Stomach Mucosa stomach

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