Variant report

Variant	rs12419179
Chromosome Location	chr11:17085265-17085266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16967480..16968226-chr11:17084925..17085584,5	MCF-7	breast:
2	chr11:16966859..16968159-chr11:17084631..17085602,16	MCF-7	breast:
3	chr11:16957436..16957968-chr11:17084808..17085604,2	MCF-7	breast:
4	chr11:16967205..16968144-chr11:17084611..17085599,4	K562	blood:
5	chr11:17037168..17039319-chr11:17083342..17085313,2	MCF-7	breast:
6	chr11:16841944..16842456-chr11:17084770..17085286,2	MCF-7	breast:
7	chr11:16809483..16810382-chr11:17084674..17085567,3	MCF-7	breast:
8	chr11:16809642..16810608-chr11:17084703..17085602,3	K562	blood:
9	chr11:17085165..17088143-chr11:17093678..17095207,2	MCF-7	breast:
10	chr11:16965139..16965875-chr11:17084804..17085626,2	K562	blood:
11	chr11:16957493..16958020-chr11:17084682..17085371,2	MCF-7	breast:

No data

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11024132	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024180	0.82[ASN][1000 genomes]
rs11600230	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603765	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11604470	1.00[CHB][hapmap]
rs11604561	1.00[CHB][hapmap]
rs11605718	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11605779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11607974	1.00[CHB][hapmap]
rs11826970	0.82[ASN][1000 genomes]
rs11827341	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12417522	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1471980	1.00[ASN][1000 genomes]
rs16924899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs16933823	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs16933827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs16933873	1.00[ASN][1000 genomes]
rs17647408	1.00[CHB][hapmap]
rs1967077	1.00[ASN][1000 genomes]
rs1974527	1.00[ASN][1000 genomes]
rs1979602	1.00[CHB][hapmap]
rs2040859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28845191	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493302	1.00[ASN][1000 genomes]
rs55928651	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56254605	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57726107	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545597	1.00[ASN][1000 genomes]
rs60698184	1.00[ASN][1000 genomes]
rs61879670	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61879689	0.84[ASN][1000 genomes]
rs61879695	1.00[ASN][1000 genomes]
rs61879701	1.00[ASN][1000 genomes]
rs61881312	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72870837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72870840	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7481457	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17083800-17093800	Weak transcription	A549	lung
5	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17085000-17085400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:17085200-17085400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17085200-17085400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:17085200-17085400	Enhancers	Right Ventricle	heart

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