Variant report

Variant	rs12419892
Chromosome Location	chr11:71997715-71997716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12417751	0.84[ASN][1000 genomes]
rs60132455	0.87[AMR][1000 genomes]
rs73530721	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71993800-72004800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:71994000-72004200	Weak transcription	HSMMtube	muscle
3	chr11:71994000-72004600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:71995400-72003200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:71995600-72028000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:71996200-72003800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:71997200-72003200	Weak transcription	Esophagus	oesophagus
8	chr11:71997200-72003200	Weak transcription	Pancreas	Pancrea
9	chr11:71997400-72003200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:71997400-72004800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:71997600-71997800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:71997600-72003000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:71997600-72003200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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