Variant report

Variant	rs12431120
Chromosome Location	chr13:70397500-70397501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1019580	1.00[ASN][1000 genomes]
rs1019581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429156	1.00[ASN][1000 genomes]
rs12429374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs12430318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431067	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12856844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12877491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424307	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1424317	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17070810	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[TSI][hapmap]
rs17085337	0.82[CEU][hapmap]
rs17085369	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[TSI][hapmap]
rs17085372	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17085375	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17085391	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17085397	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[TSI][hapmap]
rs17085405	1.00[CHB][hapmap]
rs17787264	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1890046	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs1932988	1.00[ASN][1000 genomes]
rs2325244	0.88[AMR][1000 genomes]
rs2325245	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35032606	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35231947	1.00[ASN][1000 genomes]
rs35788056	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317932	1.00[ASN][1000 genomes]
rs7330188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7335970	1.00[ASN][1000 genomes]
rs73520084	1.00[ASN][1000 genomes]
rs73522005	1.00[ASN][1000 genomes]
rs73522016	1.00[ASN][1000 genomes]
rs74092464	1.00[ASN][1000 genomes]
rs9529634	1.00[CHB][hapmap]
rs9542073	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs9564615	1.00[CHB][hapmap]
rs9592662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv900486	chr13:70302991-70421896	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv562208	chr13:70397216-70403590	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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