Variant report
| Variant | rs12435851 |
|---|---|
| Chromosome Location | chr14:85850844-85850845 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr14:85850581-85850877 | HepG2 | liver: | n/a | chr14:85850737-85850752 |
| 2 | MAFF | chr14:85850680-85850844 | HepG2 | liver: | n/a | chr14:85850736-85850754 |
| 3 | MAFK | chr14:85850692-85850847 | IMR90 | lung: | n/a | chr14:85850737-85850752 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258814 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10498590 | 1.00[ASW][hapmap] |
| rs10873363 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12433201 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17121075 | 0.88[EUR][1000 genomes] |
| rs17258694 | 0.82[EUR][1000 genomes] |
| rs17796849 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28689985 | 0.95[ASN][1000 genomes] |
| rs3736817 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3736818 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59690397 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61980088 | 0.85[EUR][1000 genomes] |
| rs61980106 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61980107 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72691207 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047924 | chr14:85826280-85868228 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035826 | chr14:85850141-85898732 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
