The 2.0 version of rSNPBase

Variant report

Variant rs12452273
Chromosome Location chr17:43552921-43552922
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43519600-43564600 Weak transcription HSMMtube muscle
3 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
5 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr17:43527600-43556800 Weak transcription Fetal Lung lung
7 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
8 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
9 chr17:43533800-43553800 Weak transcription Fetal Brain Female brain
10 chr17:43534000-43554200 Weak transcription Brain Germinal Matrix brain
11 chr17:43534000-43559000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr17:43539600-43555000 Weak transcription NHLF lung
13 chr17:43539800-43564800 Weak transcription HSMM muscle
14 chr17:43540000-43555000 Weak transcription A549 lung
15 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
18 chr17:43540800-43556000 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr17:43543600-43555000 Weak transcription H9 Cell Line embryonic stem cell
20 chr17:43546600-43559200 Weak transcription Ovary ovary
21 chr17:43546600-43565000 Weak transcription Brain Cingulate Gyrus brain
22 chr17:43546800-43560000 Weak transcription Stomach Mucosa stomach
23 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr17:43547200-43560200 Weak transcription HMEC breast
25 chr17:43547400-43555200 Weak transcription NHEK skin
26 chr17:43547400-43560600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr17:43548200-43561800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr17:43548200-43567600 Weak transcription Small Intestine intestine
29 chr17:43548400-43566600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
31 chr17:43549400-43556400 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr17:43549600-43555600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr17:43549600-43555600 Strong transcription Fetal Stomach stomach
34 chr17:43549600-43555600 Strong transcription Stomach Smooth Muscle stomach
35 chr17:43549600-43556200 Strong transcription Primary monocytes fromperipheralblood blood
36 chr17:43549600-43556200 Strong transcription Liver Liver
37 chr17:43549800-43555600 Strong transcription Fetal Intestine Small intestine
38 chr17:43549800-43555800 Strong transcription Primary T helper cells PMA-I stimulated --
39 chr17:43550000-43557400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr17:43550200-43560000 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr17:43550200-43564600 Weak transcription Primary B cells from cord blood blood
42 chr17:43550400-43554800 Weak transcription HepG2 liver
43 chr17:43550400-43560400 Weak transcription HUVEC blood vessel
44 chr17:43550400-43565000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr17:43551000-43553000 Strong transcription Fetal Intestine Large intestine
46 chr17:43551200-43553800 Weak transcription Muscle Satellite Cultured Cells --
47 chr17:43551400-43555400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr17:43551600-43555400 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr17:43551600-43555600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr17:43551600-43555600 Strong transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015