Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr17:33890500-33890996	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33890829..33892673-chr17:33894883..33896486,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1001441	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs10068	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1037590	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[ASN][1000 genomes]
rs10512472	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1071965	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs11653310	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11870472	0.85[ASN][1000 genomes]
rs12604067	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs16971217	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs17637907	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1968578	0.99[ASN][1000 genomes]
rs225247	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs225251	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs225254	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs225262	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs225277	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs225306	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2840044	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs28498569	0.87[ASN][1000 genomes]
rs2889311	0.89[ASN][1000 genomes]
rs34054049	0.87[ASN][1000 genomes]
rs7503168	0.95[ASN][1000 genomes]
rs9890191	0.81[AMR][1000 genomes]
rs9891800	0.83[ASN][1000 genomes]
rs9894057	0.97[ASN][1000 genomes]
rs9897552	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9899927	0.84[AMR][1000 genomes]
rs9900378	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9905788	0.87[ASN][1000 genomes]
rs9906105	0.87[ASN][1000 genomes]
rs9908158	0.83[ASN][1000 genomes]
rs9913003	0.83[ASN][1000 genomes]
rs9915021	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33888600-33894200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:33889600-33894000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:33889800-33894000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:33890600-33892200	Flanking Active TSS	K562	blood

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