Variant report

Variant	rs12460429
Chromosome Location	chr19:52958788-52958789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF534-1	chr19:52956835-52962089	NONHSAT067555

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs10408608	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10410134	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10853848	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10853849	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084159	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084160	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084163	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1112889	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1115659	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1115660	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11879152	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12459176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366259	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379639	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1428177	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428178	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1428179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1428180	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1457854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457857	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1457858	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1465558	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1465559	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582914	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1617840	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1651527	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1651532	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1651533	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1651534	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1651535	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1651536	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1651537	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1651538	0.85[EUR][1000 genomes]
rs1673892	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1673893	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1673894	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1673900	0.88[EUR][1000 genomes]
rs1673901	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1673902	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1673903	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673904	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673905	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673906	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673907	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673908	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673909	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673910	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673911	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673912	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673913	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673914	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673915	0.89[ASN][1000 genomes]
rs1817266	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1840997	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1840998	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1864019	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1896640	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1896641	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1896642	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1896644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2042912	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2099053	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2115101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115103	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2434459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2434461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2446078	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2446079	0.89[ASN][1000 genomes]
rs2560997	0.92[ASN][1000 genomes]
rs2560998	0.83[ASN][1000 genomes]
rs2560999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2561000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2561002	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561003	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2561005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561006	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561010	0.85[ASN][1000 genomes]
rs2561011	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561013	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561014	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561015	1.00[CEU][hapmap]
rs2561016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2561017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2561018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2561023	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2561024	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2561025	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2561026	0.98[ASN][1000 genomes]
rs2561027	0.95[ASN][1000 genomes]
rs2561028	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608487	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608488	0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2608491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608492	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2608493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2608494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2608495	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2608496	0.96[ASN][1000 genomes]
rs2608497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608498	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608499	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608500	0.86[ASN][1000 genomes]
rs2608501	0.87[ASN][1000 genomes]
rs2608502	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608505	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608506	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608536	0.98[ASN][1000 genomes]
rs2608537	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2608543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28451504	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2903895	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324092	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324093	0.89[AFR][1000 genomes]
rs324094	0.89[AFR][1000 genomes]
rs324095	0.89[AFR][1000 genomes]
rs324096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324097	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs324098	0.89[AFR][1000 genomes]
rs324099	0.89[AFR][1000 genomes]
rs324100	0.89[AFR][1000 genomes]
rs324101	0.89[AFR][1000 genomes]
rs324102	0.87[AFR][1000 genomes]
rs324103	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324104	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324106	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324107	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324113	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324114	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324115	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs324116	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs324117	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs324118	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35170850	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4340424	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4404182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4801916	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4802939	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802945	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802949	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802950	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802951	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4802952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6509636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6509637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6509638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6509641	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6509643	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7246597	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7247031	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7247289	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72483966	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7252655	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8102815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8106806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8110808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8110920	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8182524	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8182529	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8182531	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8182532	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8182563	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs970555	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs970556	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979156	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979157	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979158	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs979159	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066537	chr19:52794424-53044977	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv544060	chr19:52794424-53044977	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2762048	chr19:52895166-52997571	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1063648	chr19:52938131-53041119	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3415774	chr19:52938189-52970794	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52954000-52961600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr19:52954400-52961400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr19:52954400-52962600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:52955800-52961400	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr19:52956000-52969600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:52956000-52986200	ZNF genes & repeats	Liver	Liver
7	chr19:52956200-52961400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr19:52956200-52961400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:52956200-52961600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr19:52956200-52962800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr19:52956400-52961200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
12	chr19:52956400-52961400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr19:52956400-52961400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:52956400-52961400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr19:52956400-52961600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
16	chr19:52956400-52963800	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr19:52956800-52961000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr19:52956800-52961200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr19:52956800-52961400	ZNF genes & repeats	Spleen	Spleen
20	chr19:52957200-52961600	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr19:52957400-52964600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:52957400-52970200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:52957600-52959200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr19:52957600-52959600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:52957600-52961200	ZNF genes & repeats	Fetal Kidney	kidney
26	chr19:52957600-52962600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr19:52957600-52964800	ZNF genes & repeats	Fetal Lung	lung
28	chr19:52957600-52967200	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr19:52957600-52967400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:52957800-52958800	Weak transcription	Left Ventricle	heart
31	chr19:52957800-52959200	Weak transcription	Right Ventricle	heart
32	chr19:52957800-52959200	Weak transcription	HSMMtube	muscle
33	chr19:52957800-52959400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr19:52957800-52961200	ZNF genes & repeats	Fetal Brain Male	brain
35	chr19:52957800-52961400	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr19:52957800-52962800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:52957800-52964000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr19:52957800-52967000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:52957800-52968800	ZNF genes & repeats	Brain Germinal Matrix	brain
40	chr19:52957800-52969600	ZNF genes & repeats	Fetal Brain Female	brain
41	chr19:52957800-52970000	ZNF genes & repeats	Brain Anterior Caudate	brain
42	chr19:52957800-52990400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr19:52958000-52959000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr19:52958000-52959200	Weak transcription	Brain Substantia Nigra	brain
45	chr19:52958000-52959200	Weak transcription	NHDF-Ad	bronchial
46	chr19:52958000-52959400	Weak transcription	Brain Hippocampus Middle	brain
47	chr19:52958000-52961600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr19:52958200-52959000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
49	chr19:52958200-52959200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr19:52958200-52961400	ZNF genes & repeats	Fetal Stomach	stomach

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