Variant report

Variant	rs12467717
Chromosome Location	chr2:210351544-210351545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10179969	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10207071	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10207360	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11680789	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12327904	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13411087	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13425141	0.85[CEU][hapmap]
rs1396777	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17236857	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17726677	0.85[CEU][hapmap]
rs17726713	0.85[CEU][hapmap]
rs2219084	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2365661	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2886434	0.85[CEU][hapmap]
rs62213450	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62213452	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62213453	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6435527	0.82[CEU][hapmap]
rs7355281	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210338000-210357400	Weak transcription	Aorta	Aorta
2	chr2:210339200-210359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:210339200-210360000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:210341800-210352600	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210342000-210352800	Weak transcription	Left Ventricle	heart
6	chr2:210342000-210353600	Weak transcription	Fetal Brain Male	brain
7	chr2:210345200-210355200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:210347000-210352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:210348800-210352600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:210348800-210352800	Weak transcription	Ovary	ovary
11	chr2:210349600-210351600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr2:210349800-210351800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:210350000-210352000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:210350600-210352000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:210351200-210354200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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