The 2.0 version of rSNPBase

Variant report

Variant rs12469060
Chromosome Location chr2:11841565-11841566
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11829400-11841800 Weak transcription Primary B cells from cord blood blood
2 chr2:11833600-11841800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr2:11836800-11843200 Enhancers Placenta Placenta
4 chr2:11837800-11843200 Enhancers Primary hematopoietic stem cells short term culture blood
5 chr2:11837800-11845400 Weak transcription Pancreas Pancrea
6 chr2:11837800-11848200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr2:11838000-11842400 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr2:11838000-11842400 Weak transcription Spleen Spleen
9 chr2:11838000-11843000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr2:11838000-11843200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr2:11838200-11842000 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr2:11838200-11843400 Weak transcription HMEC breast
13 chr2:11838400-11841600 Enhancers Ovary ovary
14 chr2:11838400-11844000 Weak transcription Lung lung
15 chr2:11838400-11845000 Weak transcription Brain Anterior Caudate brain
16 chr2:11838600-11843400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:11838600-11848000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr2:11838800-11841600 Enhancers Skeletal Muscle Female skeletal muscle
19 chr2:11838800-11843400 Weak transcription NH-A brain
20 chr2:11839000-11841800 Weak transcription Osteobl bone
21 chr2:11839000-11842200 Weak transcription K562 blood
22 chr2:11839000-11843200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr2:11839000-11843400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr2:11839000-11843400 Weak transcription NHLF lung
25 chr2:11839000-11843600 Weak transcription NHEK skin
26 chr2:11839200-11842000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr2:11839200-11842000 Enhancers Skeletal Muscle Male skeletal muscle
28 chr2:11839200-11842400 Weak transcription Colon Smooth Muscle Colon
29 chr2:11839200-11843200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr2:11839200-11843600 Weak transcription HSMMtube muscle
31 chr2:11839400-11843200 Weak transcription Muscle Satellite Cultured Cells --
32 chr2:11839400-11843400 Weak transcription HSMM muscle
33 chr2:11839400-11843600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr2:11840200-11842200 Enhancers Fetal Adrenal Gland Adrenal Gland
35 chr2:11840200-11844000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr2:11840600-11842000 Enhancers Fetal Muscle Leg muscle
37 chr2:11840800-11841600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr2:11840800-11842600 Enhancers Esophagus oesophagus
39 chr2:11841000-11843000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr2:11841200-11841800 Enhancers Brain Angular Gyrus brain
41 chr2:11841200-11842200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr2:11841200-11842600 Weak transcription Psoas Muscle Psoas
43 chr2:11841200-11842800 Enhancers Primary monocytes fromperipheralblood blood
44 chr2:11841200-11842800 Enhancers Primary hematopoietic stem cells blood
45 chr2:11841200-11842800 Enhancers Dnd41 blood
46 chr2:11841400-11841600 Enhancers Brain Substantia Nigra brain
47 chr2:11841400-11842600 Enhancers Fetal Thymus thymus
48 chr2:11841400-11842800 Enhancers Primary B cells from peripheral blood blood
49 chr2:11841400-11842800 Enhancers Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015