Variant report

Variant	rs12476001
Chromosome Location	chr2:21048673-21048674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21043585..21045869-chr2:21048103..21049908,2	K562	blood:
2	chr2:21047084..21049912-chr2:21051733..21053439,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12469525	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16982026	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340603	0.96[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340607	0.96[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4971529	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs518968	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs575246	0.96[EUR][1000 genomes]
rs597781	0.92[EUR][1000 genomes]
rs645100	0.96[EUR][1000 genomes]
rs645150	0.81[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs666471	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs839915	0.92[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21048600-21049000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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