Variant report
| Variant | rs12478566 |
|---|---|
| Chromosome Location | chr2:56052313-56052314 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs11125607 | 0.83[ASN][1000 genomes] |
| rs11125608 | 0.80[ASN][1000 genomes] |
| rs1344732 | 0.95[ASN][1000 genomes] |
| rs1346781 | 0.91[ASN][1000 genomes] |
| rs1346783 | 0.93[ASN][1000 genomes] |
| rs1346787 | 0.83[ASN][1000 genomes] |
| rs1346790 | 0.83[ASN][1000 genomes] |
| rs1367225 | 0.95[ASN][1000 genomes] |
| rs1367226 | 0.83[ASN][1000 genomes] |
| rs1430189 | 0.91[ASN][1000 genomes] |
| rs1430190 | 0.95[ASN][1000 genomes] |
| rs1430191 | 0.90[ASN][1000 genomes] |
| rs1430203 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1897114 | 0.86[ASN][1000 genomes] |
| rs1960050 | 0.91[ASN][1000 genomes] |
| rs1985160 | 0.95[ASN][1000 genomes] |
| rs1985162 | 0.95[ASN][1000 genomes] |
| rs2052933 | 0.91[ASN][1000 genomes] |
| rs2115876 | 0.93[ASN][1000 genomes] |
| rs2115878 | 0.97[ASN][1000 genomes] |
| rs4352264 | 0.85[ASN][1000 genomes] |
| rs4672074 | 0.93[ASN][1000 genomes] |
| rs4672075 | 0.87[ASN][1000 genomes] |
| rs6545523 | 0.90[ASN][1000 genomes] |
| rs6545526 | 0.90[ASN][1000 genomes] |
| rs6545527 | 0.83[ASN][1000 genomes] |
| rs6708796 | 0.93[ASN][1000 genomes] |
| rs6712017 | 0.91[ASN][1000 genomes] |
| rs6714513 | 0.91[ASN][1000 genomes] |
| rs6733730 | 0.90[ASN][1000 genomes] |
| rs6743114 | 0.83[ASN][1000 genomes] |
| rs6749785 | 0.93[ASN][1000 genomes] |
| rs6751403 | 0.91[ASN][1000 genomes] |
| rs6753814 | 0.91[ASN][1000 genomes] |
| rs6757057 | 0.91[ASN][1000 genomes] |
| rs72618677 | 0.81[ASN][1000 genomes] |
| rs732132 | 0.90[ASN][1000 genomes] |
| rs7426380 | 0.82[ASN][1000 genomes] |
| rs7572523 | 0.93[ASN][1000 genomes] |
| rs7574127 | 0.91[ASN][1000 genomes] |
| rs7607070 | 0.81[ASN][1000 genomes] |
| rs7609520 | 0.90[ASN][1000 genomes] |
| rs934278 | 0.86[ASN][1000 genomes] |
| rs9753383 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56050400-56054400 | Weak transcription | A549 | lung |
| 2 | chr2:56051600-56053200 | Enhancers | Placenta | Placenta |
| 3 | chr2:56051800-56053600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
| 4 | chr2:56052000-56052400 | Weak transcription | Pancreas | Pancrea |
