Variant report

Variant	rs12491352
Chromosome Location	chr3:85361077-85361078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1005690	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014796	0.82[JPT][hapmap]
rs1030720	0.82[JPT][hapmap]
rs10433499	0.82[JPT][hapmap]
rs12487446	1.00[JPT][hapmap]
rs12487784	1.00[JPT][hapmap]
rs12489229	1.00[JPT][hapmap]
rs12491707	1.00[JPT][hapmap]
rs12496274	1.00[JPT][hapmap]
rs12497411	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12498133	1.00[JPT][hapmap]
rs1368744	0.82[JPT][hapmap]
rs1433710	0.82[JPT][hapmap]
rs17022612	0.81[YRI][hapmap]
rs17022614	0.81[YRI][hapmap]
rs17022655	0.81[YRI][hapmap]
rs17022682	0.82[YRI][hapmap]
rs17022685	0.82[AFR][1000 genomes]
rs1985715	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077839	0.82[JPT][hapmap]
rs2123164	0.82[ASN][1000 genomes]
rs2167605	0.81[YRI][hapmap]
rs2200465	1.00[JPT][hapmap]
rs35228298	0.90[ASN][1000 genomes]
rs4856270	0.82[JPT][hapmap]
rs57202752	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58416672	0.93[ASN][1000 genomes]
rs58725437	0.82[AFR][1000 genomes]
rs60117233	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60794345	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61288113	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61318951	0.93[ASN][1000 genomes]
rs6770622	1.00[JPT][hapmap]
rs6773806	1.00[JPT][hapmap]
rs6774581	1.00[JPT][hapmap]
rs6810225	0.82[JPT][hapmap]
rs72903204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903206	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903210	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903211	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903214	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903217	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903248	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903250	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903253	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903254	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72903258	0.93[ASN][1000 genomes]
rs72903261	0.93[ASN][1000 genomes]
rs72903264	0.93[ASN][1000 genomes]
rs72903271	0.93[ASN][1000 genomes]
rs72903274	0.93[ASN][1000 genomes]
rs72919301	0.80[AFR][1000 genomes]
rs72921314	0.82[AFR][1000 genomes]
rs72921316	0.82[AFR][1000 genomes]
rs72921317	0.82[AFR][1000 genomes]
rs72921320	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921324	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921330	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921331	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921337	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921344	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921353	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921358	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921359	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921360	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921361	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921365	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921368	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921370	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611119	1.00[JPT][hapmap]
rs7616336	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643802	1.00[JPT][hapmap]
rs7647981	0.82[JPT][hapmap]
rs7651113	0.82[JPT][hapmap]
rs9309974	0.82[JPT][hapmap]
rs9309978	0.82[JPT][hapmap]
rs9821283	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9825345	0.82[JPT][hapmap]
rs9846153	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv522622	chr3:85352957-85366517	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
15	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85352000-85365800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:85352600-85366000	Weak transcription	Fetal Brain Male	brain
3	chr3:85353000-85366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:85355600-85368600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:85359600-85366000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:85359800-85366000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:85360000-85365400	Weak transcription	Brain Substantia Nigra	brain

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