Variant report

Variant	rs12491423
Chromosome Location	chr3:116013900-116013901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12489444	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1541871	1.00[JPT][hapmap]
rs1619655	1.00[JPT][hapmap]
rs16845196	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs17646258	1.00[JPT][hapmap]
rs1835674	1.00[JPT][hapmap]
rs1920185	1.00[JPT][hapmap]
rs2163504	1.00[JPT][hapmap]
rs57411025	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs724115	1.00[JPT][hapmap]
rs7627104	1.00[JPT][hapmap]
rs7648197	1.00[JPT][hapmap]
rs9852860	1.00[JPT][hapmap]
rs988803	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:116007400-116014400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:116007600-116014200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:116007600-116014400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:116007600-116016800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:116007800-116014200	Weak transcription	Brain Substantia Nigra	brain
8	chr3:116009000-116014200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:116009000-116018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:116009200-116018200	Weak transcription	Brain Germinal Matrix	brain
11	chr3:116013600-116015000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:116013800-116014200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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