Variant report

Variant	rs12497274
Chromosome Location	chr3:118608675-118608676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13090692	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1521292	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1521299	0.81[ASN][1000 genomes]
rs4687953	0.83[ASN][1000 genomes]
rs6438476	0.82[AMR][1000 genomes]
rs6764143	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6789125	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6792206	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6794562	0.81[ASN][1000 genomes]
rs962115	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118601800-118609200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:118604200-118609000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
5	chr3:118604400-118620000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:118606400-118613200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:118607600-118609000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:118608400-118621400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:118608600-118610600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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